PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g006471m
Common NameCISIN_1g005491mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ARF
Protein Properties Length: 644aa    MW: 72118.3 Da    PI: 6.8763
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g006471mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.99.6e-2476175197
                        EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                        f kvlt sd++++g +++ +k+a+e+     +++++ +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD++vF   + 
  orange1.1g006471m  76 FSKVLTASDTSTHGGFSVLRKHATEClppldMNQSTPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFL--RG 165
                        88****************************9445555669************************************************..44 PP

                        SEE..EEEEE CS
                 B3  88 sefelvvkvf 97 
                        +++el+v+v+
  orange1.1g006471m 166 ENGELHVGVR 175
                        99999**996 PP
2Auxin_resp107.21.8e-35202281183
         Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                        a+ha++t+++F v+Y+Pr+  s+F+++++k+++a+++k++vGmR+km+fe+eds+err+sGtvvgv+d++p +W++SkWrsLk
  orange1.1g006471m 202 ASHAVATQTMFVVYYKPRT--SQFIISLNKYLEAVNNKFAVGMRYKMRFEGEDSPERRFSGTVVGVEDFSP-HWKDSKWRSLK 281
                        789***************6..9*************************************************.*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.6E-4267191IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.84E-3870205IPR015300DNA-binding pseudobarrel domain
CDDcd100175.26E-2174176No hitNo description
PROSITE profilePS5086312.15376178IPR003340B3 DNA binding domain
SMARTSM010193.2E-2176178IPR003340B3 DNA binding domain
PfamPF023622.9E-2176175IPR003340B3 DNA binding domain
PfamPF065072.1E-32202281IPR010525Auxin response factor
PfamPF023091.8E-13509620IPR033389AUX/IAA domain
SuperFamilySSF542772.16E-14526607No hitNo description
PROSITE profilePS5174526.665531612IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 644 aa     Download sequence    Send to blast
MEQLEASTNQ ELNQRIPLFR LPSKILCRVV NIHLMAEQET DEVYAQITLL PEPSQNEPTT  60
PDPCPADSPR PKVHSFSKVL TASDTSTHGG FSVLRKHATE CLPPLDMNQS TPTQELVAKD  120
LHGYEWRFKH IFRGQPRRHL LTTGWSTFVT SKRLVAGDTF VFLRGENGEL HVGVRCLARQ  180
QSSMPSSVIS SQSMHLGVLA TASHAVATQT MFVVYYKPRT SQFIISLNKY LEAVNNKFAV  240
GMRYKMRFEG EDSPERRFSG TVVGVEDFSP HWKDSKWRSL KVQWDEPASI TRPDRVSPWE  300
IEPFVASATP NLVQPVLAKN KRPRLSMEVP PLDLPSAASA PWSARLAQSH NLTQLSVTAE  360
DKRIDNHVAW HHKHSDFSSN SNFMSRTQSD GEWLTSPRVK FSQQLFQEAI DDNKNISAWP  420
AHSGHSTPHP SKPNNDTLLE QVETGRKTET GTSCRLFGIE LINHATSSAP SEKVPVSSLT  480
TEGHIISTIS AAADSDGKSD IAKEFKEKKQ EQVQVSPKES QSKQSCLTSN RSRTKVQMQG  540
VAVGRALDLT TLVGYDHLID ELEEMFDIKG QLHTRTKWEI VYTDDEGDMM LVGDDPWHEF  600
CNMVKRIFIC SSQDVKKMSP GSKLPMFSIE GEDILLSSDS AEK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-151130449355Auxin response factor 1
4ldw_A1e-151130449355Auxin response factor 1
4ldw_B1e-151130449355Auxin response factor 1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the whole plant. {ECO:0000269|PubMed:10476078}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006439306.10.0auxin response factor 9 isoform X2
SwissprotQ9XED80.0ARFI_ARATH; Auxin response factor 9
TrEMBLA0A067GMP50.0A0A067GMP5_CITSI; Auxin response factor
STRINGXP_006439306.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.10.0auxin response factor 9