PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g006470m | ||||||||
Common Name | CISIN_1g006040mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | bHLH | ||||||||
Protein Properties | Length: 644aa MW: 68505 Da PI: 5.9563 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 50.9 | 2.8e-16 | 377 | 423 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 hn ErrRRdriN+++ L+el+P++ K++Ka++L +A+eY+k Lq orange1.1g006470m 377 VHNLSERRRRDRINEKMRALQELIPNC-----NKVDKASMLDEAIEYLKTLQ 423 6*************************8.....6******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00083 | 2.02E-17 | 369 | 427 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 3.0E-20 | 370 | 431 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.11E-20 | 370 | 435 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 18.349 | 373 | 422 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 9.3E-14 | 377 | 423 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.7E-17 | 379 | 428 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009704 | Biological Process | de-etiolation | ||||
GO:0009740 | Biological Process | gibberellic acid mediated signaling pathway | ||||
GO:0010017 | Biological Process | red or far-red light signaling pathway | ||||
GO:0031539 | Biological Process | positive regulation of anthocyanin metabolic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042802 | Molecular Function | identical protein binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 644 aa Download sequence Send to blast |
MLNGIQMSDP SGEMGLNQDD DMVPWLNYAV DESLQQDYCS DFLHELSGVT GNELSSQNNF 60 ASFDKRSSSN QFDREFNSVF GNHGARLEHG NVSKVSSVGG GEATRPRSST NPLYTSSSQQ 120 CQTSLPNLRS GVSDSTSNGI KNSTDNGIFQ GSNPTATGNL SGLKLHKQDQ RLSTNNSGVM 180 NFSHFARPVA LVRANLQNIG SMPGARLSRI ERMGSKDKSS VASRSPVESP LIDSSGCLRK 240 ESSCQPAAVT SKVDVKPQEA KSSEQPVSEP PEAACREDAL NNDKKPSQVH AESATKGVVE 300 SEKTVEPVVA ASSVCSGNSV ERASDDLPHN VKRKHCDLDD SECPSEEQDV EEESVGVKKQ 360 VPGRVGTGSK RSRAAEVHNL SERRRRDRIN EKMRALQELI PNCNKVDKAS MLDEAIEYLK 420 TLQLQVQIMS MGAGFYMPPM MYPSGMQHMH AAHMAHFPPI GIGMGMGVGY GMGMPDINGG 480 SSCYPMVQVP AMHGAHFPGT SFSGSSALQG MAGSNFQLLG LPAQGHPMSM PHAPLNPLSG 540 GPIMKSAMGL NPAGMVGSMD NTDAAKGSTS KDLVQNVNSQ VKQNTGAKGP VDQASGQCEA 600 TNEGSAEPAA VQDNCQASEV NGPVTYNSSR KNENESSNPA FFE* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 381 | 386 | ERRRRD |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00081 | ChIP-seq | Transfer from AT1G09530 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006423962.1 | 0.0 | transcription factor PIF3 | ||||
Refseq | XP_006480339.1 | 0.0 | transcription factor PIF3 | ||||
TrEMBL | A0A067ER79 | 0.0 | A0A067ER79_CITSI; Uncharacterized protein | ||||
STRING | XP_006480339.1 | 0.0 | (Citrus sinensis) | ||||
STRING | XP_006423961.1 | 0.0 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G09530.2 | 4e-55 | phytochrome interacting factor 3 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g006470m |