PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | orange1.1g006230m | ||||||||
Common Name | CISIN_1g005058mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
|
||||||||
Family | TALE | ||||||||
Protein Properties | Length: 656aa MW: 73339.2 Da PI: 6.7531 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 27.1 | 7.3e-09 | 420 | 457 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yps ++ LA+++gL+ +qV++WF N R + orange1.1g006230m 420 FEHflHPYPSDVDKHILARQTGLSRSQVSNWFINARVR 457 554459******************************88 PP | |||||||
2 | BELL | 119.5 | 1.5e-38 | 281 | 352 | 1 | 72 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 e++elqk+k+kLls+leeVd+rY++y++q+++v+ssFeavag g+a++Y +lA+ka+SrhFrcL+d i++qi orange1.1g006230m 281 EFMELQKRKTKLLSMLEEVDRRYRHYCDQMKAVVSSFEAVAGNGAARVYSALASKAMSRHFRCLRDGIVGQI 352 679*******************************************************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 1.1E-61 | 219 | 350 | IPR006563 | POX domain |
Pfam | PF07526 | 5.6E-48 | 225 | 348 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.179 | 398 | 461 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.07E-11 | 401 | 462 | No hit | No description |
SMART | SM00389 | 5.8E-9 | 401 | 465 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 5.99E-17 | 402 | 467 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.2E-27 | 404 | 467 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 8.8E-18 | 418 | 457 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0009506 | Cellular Component | plasmodesma | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 656 aa Download sequence Send to blast |
MMNQIQGFEG NHEIFNLTTG MEMIGFSKNL QQHTSDNNSV MWKEFFNNKP AGNNPGPSSS 60 KTINESTTSD HHFYQHDHQF NKQDFTTGMS ETSGENLIVG HDHSDVAGAW QENNSRLLVD 120 DSSLRCVFPC EGNERPSQGL SLSLSSSNPS SIGLQSFELR QTNHNDHDHQ QDDMRFISSS 180 TSREGFFGKP AAGIQQQQQM MQDGFLGKPA IPPNIHHQTG HQFQLRNSKY LAPAQEILKE 240 FCSLGTKQND ATKLKSNKAK QQWDDENAGS SSRKQSLCSL EFMELQKRKT KLLSMLEEVD 300 RRYRHYCDQM KAVVSSFEAV AGNGAARVYS ALASKAMSRH FRCLRDGIVG QIQATKKAMG 360 EKDPVAPGTS RGETPRLKII DQTLRQQRAF QQMSMMESHP WRPQRGLPER SVSVLRAWLF 420 EHFLHPYPSD VDKHILARQT GLSRSQVSNW FINARVRLWK PMVEEMYLEE TKEQDNNMAS 480 SDGATDLDDN SGRPNQTQNP PADQKPTQDQ LVRIDSECLS SIINNHDKND ANKNPNKALP 540 SHHMQQNFGS FGAMELDFSS YNQHTVGGVS YANDSANHQN FNGGSGGVSL TLGLQQHGGS 600 GVSLAFSPAS QSSLFYPRDH IEDCQQVQYS LLDGEGQNLP YRNLMGAQLL HDLAG* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3k2a_A | 3e-15 | 407 | 465 | 5 | 63 | Homeobox protein Meis2 |
3k2a_B | 3e-15 | 407 | 465 | 5 | 63 | Homeobox protein Meis2 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Csi.8169 | 0.0 | flower| leaf |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Early expression is detected in the inflorescence apex of developing flowers and also in the ovule primordium and the integuments. {ECO:0000269|PubMed:8521490}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in both floral and vegetative tissues. {ECO:0000269|PubMed:8521490}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Plays a major role in ovule patterning and in determination of integument identity via its interaction with MADS-box factors. Formation of complex with AG-SEP dimers negatively regulates the carpel identity process and favors the maintenance of ovule identity. BEL1-STM complex maintains the indeterminacy of the inflorescence meristem. Required, with SPL, for cytokinin-induced PIN1 expression in ovules (PubMed:22786869). {ECO:0000269|PubMed:12244239, ECO:0000269|PubMed:17693535, ECO:0000269|PubMed:22786869}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024045025.1 | 0.0 | homeobox protein BEL1 homolog isoform X2 | ||||
Swissprot | Q38897 | 1e-146 | BEL1_ARATH; Homeobox protein BEL1 homolog | ||||
TrEMBL | A0A067GLL1 | 0.0 | A0A067GLL1_CITSI; Uncharacterized protein | ||||
STRING | XP_006439494.1 | 0.0 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G41410.1 | 1e-136 | TALE family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | orange1.1g006230m |
Publications ? help Back to Top | |||
---|---|---|---|
|