PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g006217m
Common NameCISIN_1g006217mg, LOC102624378
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 657aa    MW: 73464 Da    PI: 4.9068
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g006217mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH16.41.6e-054715041755
                        HHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                HLH  17 NsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                        N++f  Lr+++P  +       ++Ka+iL  +++Y+k+L+
  orange1.1g006217m 471 NEKFMVLRSMVPYiS------EVDKASILSDTIKYLKKLE 504
                        99***********66......8***************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142153.8E-5415196IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS508889.064454503IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.40E-6462508No hitNo description
SMARTSM003534.6E-6464509IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.01E-9469520IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.6E-8471513IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 657 aa     Download sequence    Send to blast
MASAAQNQEG VPEILRKQLA VAVRSIQWSY AIFWSLSAAQ QGVLEWGDGY YNGDIKTRKT  60
MQAMELTPDK IGLQRSKQLR ELYESLLKGE SELAYKRPSA ALSPEDLTDA EWYYLVCMSF  120
VFSSGQGLPG RALANSETIW LCNAQCADSK VFSRSLLAKS ASIQTVICFP HLDGVIELGV  180
TELVPEDPSL LQHIKASLLD FSKPFCSEKS SSPPYDEDDD SDPLCAKVSH EILDTVALES  240
LYSPGEENKF DGEGVYELHG NINEELHLDS ADECSKGCEH NHQTEESFMV DGINGAASQV  300
QSWHFVDDDL SNGIPDSMHS SDHKSESLVN QAEGFPSSKD ENMSHIQLKE LQEGNHTKLS  360
LLDLGIVDGA HYRKTLSAIF GSSNRLTENP CFLSVEHKSS FVSWKKGGMV KRHWPGIQQN  420
LLKKILFSVP LMHGGCTHRS QKEICRKYCP VTMESDNFCE EHISSDKRTE NEKFMVLRSM  480
VPYISEVDKA SILSDTIKYL KKLEARVEEL ESCMYSVDSE PRPKRNYTEM VEQTSDNYDN  540
KKLDNHKKPW INKRKACDID ETDPELNKFV PKDGLADVKV SIQEMDVLIE MRCPSREYIL  600
LDIMDAINNL HLDAYSVVSS NLDGVLTLAL KSTFRGAAIA PAGIIEQALW KIAGKC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rru_A5e-191319446227Transcription factor MYC3
4ywc_A5e-191319446227Transcription factor MYC3
4ywc_B5e-191319446227Transcription factor MYC3
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.101750.0flower| fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF6458110.0EF645811.1 Citrus sinensis cultivar Valencia MYC2 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006445042.10.0transcription factor EGL1 isoform X1
RefseqXP_006491098.10.0transcription factor EGL1
TrEMBLA0A067H5G20.0A0A067H5G2_CITSI; Uncharacterized protein
TrEMBLV4TXI70.0V4TXI7_9ROSI; Uncharacterized protein
STRINGXP_006491098.10.0(Citrus sinensis)
STRINGXP_006445042.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25922867
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41315.11e-158bHLH family protein