PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g006142m
Common NameCISIN_1g004499mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 660aa    MW: 72656.9 Da    PI: 6.3293
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g006142mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.60.000545465831355
                        HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                HLH  13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                        R+ i +++ eLrel+P+ +      K s  + Le++++++  Lq
  orange1.1g006142m 546 RQLIQDRIKELRELVPNgS------KCSIDSLLERTIKHMLFLQ 583
                        77899************55......7777778999999988887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.4E-3611171IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474593.66E-5531588IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.115533582IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.3E-4544589IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000830.00292546583No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 660 aa     Download sequence    Send to blast
MGASSTTFDL HGILKSLCFN TAWKYAVFWK LKHRTRMVLT WEDGYYDNCG QQDSLENKCS  60
SESLENFHGG RYSHDPLGLA VAKMSYHVYS LGEGIVGQVA VTGKHQWIFS DQLVTNSCSS  120
FEFSDGWQSQ FSAGIRTIAV VAVVPHGVVQ LGSLDEVTED MKVVTHIRDV FAALNDISVG  180
HVSSTIQSSV KNTLSLPDLP TKTIPNRWHN LDEVVNRGGP DVQLPMFPYV EKHNDGSYAF  240
SGMQPKIGDG VVNRNEGILL SSAGGVGSAK ILHPKSNVIN LDYQNQMGIH FISDGMSRVE  300
SSGWKDLGVI SEQNGTPFSI NSVIDSINLC SVALQAEKFV ADRTYLASNP LEAVLGEQVK  360
LECTDSCQNG MLHIPEISDI KFEKDLEKLQ NQTELNHLDP SGMSLKFSAV SELHEALGPA  420
FLRKDIYNDR EPENTVDGET VGMPELTSSS HLMFDSGSEN LLDAVVASVC NSGSDVKSER  480
TFCRSMQSLL TTEKKPESSS QMSSKGFSST CPSTCSEQLD RSSEPAKNNK KRARTGENGR  540
PRPRDRQLIQ DRIKELRELV PNGSKCSIDS LLERTIKHML FLQSITKHAD KLSKCAESKM  600
HQKGNGIHGS NYEQGSSWAV EMGSHLKVCS IVVENLNKNG QMLVEVSIDH LCSFCRKQF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006443867.10.0transcription factor EMB1444 isoform X3
RefseqXP_006479559.10.0transcription factor EMB1444 isoform X2
TrEMBLA0A067FZ290.0A0A067FZ29_CITSI; Uncharacterized protein
STRINGXP_006479559.10.0(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31280.11e-134conserved peptide upstream open reading frame 7