PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g006081m
Common NameCISIN_1g006081mg, LOC102617759
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family CPP
Protein Properties Length: 663aa    MW: 72106 Da    PI: 8.5776
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g006081mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR26.99.5e-091952201642
                TCR  16 kYCeCfaagkkCseeCkCedCkNkeek 42 
                        kYCeCfaag +C+  C+C +C+N+ e+
  orange1.1g006081m 195 KYCECFAAGIYCDG-CNCVNCHNNVEH 220
                        8*************.********9876 PP
2TCR50.83.3e-16265304140
                TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 
                        k++kgC+Ckks ClkkYCeCf+a+  Cse+C+C dCkN e
  orange1.1g006081m 265 KHNKGCHCKKSGCLKKYCECFQANILCSENCRCLDCKNFE 304
                        589***********************************65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011148.9E-11151220IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163433.458152305IPR005172CRC domain
PfamPF036383.7E-6195217IPR005172CRC domain
SMARTSM011141.8E-19265306IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.6E-12268303IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 663 aa     Download sequence    Send to blast
MEQGETISDF APKKLARQLD FTICRASANG LLPEQSVKSQ SSQPQSHSPL QPQPPKSQPQ  60
VQSKVASPSQ SQPLVRLQLL PPSSQPHVQA HMRSPSQAMP QWQARPQHVR MVNRVPHPVH  120
KLPLPTLPPG KQESPRSRPR ANTDGKDGTP KKQKQCNCRN SRCLKLDFVE IWINIYSNTS  180
PGAHLNTQFK DNLVKYCECF AAGIYCDGCN CVNCHNNVEH EVARQEAVGA TLERNPNAFR  240
PKIASSPHGA QDAREDAREA QLAAKHNKGC HCKKSGCLKK YCECFQANIL CSENCRCLDC  300
KNFEGSEERR ALFHGDHNGI AFMQRAANAA IIGAVGSSGY GTLMTSNKRK SEELLFGVAA  360
KDQSVIRNPQ SQQGNNVQNS AVPCSQSVPV SQTANASVLG STKSALRSPL ADILQPQDMK  420
ELCSLLVMVS SEATKTLTKK VGAMQTEREG SRSSVASPIQ EGEDSRKGHE VHNGIPDDRQ  480
SGNQMDVDGT SGSGSDGGDM LNERPLSPGT RALMCDEEDS AFMQAGPQTG LASKSTVQKS  540
NAYASTRIYA EQERLILTRF RDFLNRLITC GSIKETMCSP LVKSETRSQQ KAVEDGTSRS  600
GTEVRGYMEP CGYGSAKSAV SVTLEPSCTT TSVSSRQNND LPMRVGLSNG QRVVDSEIRN  660
RN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A2e-2715331411132Protein lin-54 homolog
5fd3_B2e-2715331411132Protein lin-54 homolog
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitous but expressed mostly in flowers. {ECO:0000269|PubMed:18057042}.
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015385077.10.0protein tesmin/TSO1-like CXC 5 isoform X1
SwissprotQ9SZD11e-141TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBLA0A067GJG00.0A0A067GJG0_CITSI; Uncharacterized protein
STRINGXP_006476073.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17832884
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-127Tesmin/TSO1-like CXC domain-containing protein