PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g006057m
Common NameCISIN_1g005465mg, LOC102621408
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ARR-B
Protein Properties Length: 664aa    MW: 73051.9 Da    PI: 6.4402
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g006057mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like89.82.4e-28199252155
            G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                        kpr++W+ eLH++Fv av+qL G++kA+Pk+il+lm+v+ Lt+e+v+SHLQkYRl
  orange1.1g006057m 199 KPRVVWSVELHRKFVAAVNQL-GIDKAVPKKILDLMNVEKLTRENVASHLQKYRL 252
                        79*******************.********************************8 PP
2Response_reg76.41.1e-25171251109
                        EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHH CS
       Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedaleal 90 
                        vl vdD+p+ + ll+++l++ +y +v++++++  al+ll+e++  +Dl++ D+ mp+mdG++ll+     e++lp+i+++++g+++++ + +
  orange1.1g006057m  17 VLAVDDDPTCLLLLETLLRRCQY-HVTTTSQAITALKLLRENKnkFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSGNGDPKLVMKGI 106
                        799********************.***************888888*******************87754.558******************* PP

                        HTTESEEEESS--HHHHHH CS
       Response_reg  91 kaGakdflsKpfdpeelvk 109
                          Ga d+l Kp+ +eel +
  orange1.1g006057m 107 THGACDYLLKPVRIEELKN 125
                        ****************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363922.3E-1701663IPR017053Response regulator B-type, plant
SuperFamilySSF521723.84E-3613136IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23001.4E-4114150No hitNo description
SMARTSM004484.3E-3115127IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.32816131IPR001789Signal transduction response regulator, receiver domain
PfamPF000726.3E-2317125IPR001789Signal transduction response regulator, receiver domain
CDDcd001561.88E-2218130No hitNo description
SuperFamilySSF466896.81E-20196256IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.0E-30196257IPR009057Homeodomain-like
PROSITE profilePS5129412.269196255IPR017930Myb domain
TIGRFAMsTIGR015574.7E-25199252IPR006447Myb domain, plants
PfamPF002491.2E-6201251IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0010082Biological Processregulation of root meristem growth
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0031537Biological Processregulation of anthocyanin metabolic process
GO:0048367Biological Processshoot system development
GO:0080022Biological Processprimary root development
GO:0080036Biological Processregulation of cytokinin-activated signaling pathway
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 664 aa     Download sequence    Send to blast
MTVEHVNGDQ FPSGLRVLAV DDDPTCLLLL ETLLRRCQYH VTTTSQAITA LKLLRENKNK  60
FDLVISDVHM PDMDGFKLLE LVGLEMDLPV IMLSGNGDPK LVMKGITHGA CDYLLKPVRI  120
EELKNIWQHV VRRKKIDAKD QNNSDNQDKP HNGSGQAEGM GNSDQNGKLN KKRKDQNEDE  180
DDEDDEDDHN HEDPTTQKKP RVVWSVELHR KFVAAVNQLG IDKAVPKKIL DLMNVEKLTR  240
ENVASHLQKY RLYLKRISCV ANQQANMVAA LGSSDPSYLR MSSVNGLGNY HTVGGPGQFQ  300
NSTFRSFPAS GMLGRLNAPA GLGMHGLPSS GMIPMRHAQN SDNTTNDQGK FHPALLPGSH  360
SGNILQGMPT SLELDQLQLN KNITSISELP NTKDNTTFHV SSGFPDARIG FGRSTNPLLD  420
VNNNPLFLEG HPQEAHSNKM FGNQSLMSLN SGSSSRLPDH GRCNDNWSSA VQSSGIQPNS  480
FSLGGDYKQP TLHPGHLRDN LSTMALPIGN SPCDVSSLHP LSNRFQDPKA DLQFQAVQDA  540
PCRSNVMFSP LNSAVSINGD VGPLGQCLDT NKTFFHRSNE FDSLGQSNFV DHFSMKINEV  600
QRSSMQASSN LKEGYLMGQQ KTQGSYISTS VDSLEDLFMS SMVKEEQDKV LVPEGNFGCS  660
SYS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-26195258164ARR10-B
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006483453.10.0two-component response regulator ARR12
TrEMBLA0A067FJF70.0A0A067FJF7_CITSI; Two-component response regulator
STRINGXP_006483453.10.0(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25180.11e-143response regulator 12