PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g006028m
Common NameCISIN_1g005368mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ARF
Protein Properties Length: 665aa    MW: 73579.9 Da    PI: 6.6439
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g006028mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3727.6e-23128228198
                        EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                        f+k+lt sd++++g +++ +k+a+e+       + ++ +++l  +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD +vF   +
  orange1.1g006028m 128 FCKILTASDTSTHGGFSVLRKHATEClppldmTLATP-TQELAAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDAFVFL--R 216
                        99**************************999744433.459************************************************..4 PP

                        SSEE..EEEEE- CS
                 B3  87 rsefelvvkvfr 98 
                         +++el+v+v+r
  orange1.1g006028m 217 GENGELRVGVRR 228
                        49999*****98 PP

2Auxin_resp102.84.5e-34254333183
         Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                        aaha++t++ F v+Y+Pr+  s+F++ ++k+++a+++ +svGmRfkm+fe+eds+err++Gt+vgv d++  +Wp+SkWrsLk
  orange1.1g006028m 254 AAHAVKTSTLFIVYYKPRT--SQFIIGLNKYLEAVHHCFSVGMRFKMRFEGEDSPERRFTGTIVGVGDFSE-QWPGSKWRSLK 333
                        79****************6..9**********************************************888.*********96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.97E-40117257IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.6E-39121243IPR015300DNA-binding pseudobarrel domain
CDDcd100177.99E-20126228No hitNo description
PROSITE profilePS5086311.899128230IPR003340B3 DNA binding domain
PfamPF023626.6E-21128228IPR003340B3 DNA binding domain
SMARTSM010191.7E-21128230IPR003340B3 DNA binding domain
PfamPF065073.8E-32254333IPR010525Auxin response factor
PfamPF023091.0E-7536585IPR033389AUX/IAA domain
SuperFamilySSF542772.35E-12543625No hitNo description
PROSITE profilePS5174525.037549630IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 665 aa     Download sequence    Send to blast
MAYVEPNFGC SLSSQGGPGS GDLYRELWKA CAGPLVEVPR NGERVYYFPQ GHIEQLEAST  60
NQELTHQEPL FDLPSKILCR VVHIELLAEQ ETDEVYAQIT LHPETDQTEP RSPDQCLPEP  120
PKQTVHSFCK ILTASDTSTH GGFSVLRKHA TECLPPLDMT LATPTQELAA KDLHGYEWRF  180
KHIFRGQPRR HLLTTGWSTF VTSKRLVAGD AFVFLRGENG ELRVGVRRLA HQQSSMPSSV  240
ISSQSMHLGV LATAAHAVKT STLFIVYYKP RTSQFIIGLN KYLEAVHHCF SVGMRFKMRF  300
EGEDSPERRF TGTIVGVGDF SEQWPGSKWR SLKIQWDEPA TVQRPERVSP WEIEPFVASA  360
PLNLAQPAVK SKRPRSIDIP ASASAFWYQG STQSHDITQV VGATEGQSSE SQVVRPMRQK  420
EIDSTIINNN STDDHRIVAA QSVLSGYASS GRPGNTVIHE EVERGKKSEA SLGCWLFGID  480
LKHNSNTAAP LGRKVVDPTT GTSGVKGSAR AASDFDASQN QDLKEVKRGM ADVSRKETQN  540
KQGSAASTRT RTKVQMQGIA VGRAVDLTAL KGYDDLFDEL EKMFEIQGQL RPRDKWAVVF  600
TDDEGDMMLA GDDQWPEFCK MVKKIFIYST EEVKNMATSS KPIASSVEGE GTAISLDSEL  660
KSET*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-175143567355Auxin response factor 1
4ldw_A1e-175143567355Auxin response factor 1
4ldw_B1e-175143567355Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024948344.10.0auxin response factor 18 isoform X2
SwissprotQ9C5W90.0ARFR_ARATH; Auxin response factor 18
TrEMBLA0A067H3B80.0A0A067H3B8_CITSI; Auxin response factor
STRINGXP_006491295.10.0(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61830.10.0auxin response factor 18
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]