PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g006006m
Common NameCISIN_1g005938mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ARR-B
Protein Properties Length: 666aa    MW: 72012.8 Da    PI: 5.5052
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g006006mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like80.81.5e-25217267152
            G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQk 52 
                        kpr++W+ eLH++Fv+av+qL G++kA+Pk+ilelm+v+gLt+e+v+SHLQ 
  orange1.1g006006m 217 KPRVVWSVELHQQFVSAVNQL-GIDKAVPKRILELMNVPGLTRENVASHLQE 267
                        79*******************.***************************974 PP
2Response_reg631.5e-21361411109
                        EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHH CS
       Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedaleal 90 
                        vl+vdD+ + +++l+q+l++  y +v++++++  al++l+e++  +D++l D+ mp+mdG++ll++i  e  +lp+i     g  + + + +
  orange1.1g006006m  36 VLVVDDDITCLRILEQMLRRCLY-NVTTCSQAAVALDILRERKgcFDVVLSDVHMPDMDGFKLLEHIGLEM-DLPVIT---DGRVSAVMRGI 122
                        89*********************.*******************************************6644.799985...456678***** PP

                        HTTESEEEESS--HHHHHH CS
       Response_reg  91 kaGakdflsKpfdpeelvk 109
                        + Ga d+l Kp+ +eel +
  orange1.1g006006m 123 RHGACDYLIKPIREEELKN 141
                        ****************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23001.2E-3533165No hitNo description
SuperFamilySSF521724.7E-3133159IPR011006CheY-like superfamily
SMARTSM004481.5E-2334143IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011034.62535147IPR001789Signal transduction response regulator, receiver domain
PfamPF000722.0E-1836141IPR001789Signal transduction response regulator, receiver domain
CDDcd001566.16E-2437146No hitNo description
SuperFamilySSF466891.49E-16214270IPR009057Homeodomain-like
PROSITE profilePS512949.295214273IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.2E-26215279IPR009057Homeodomain-like
TIGRFAMsTIGR015575.2E-22217268IPR006447Myb domain, plants
PfamPF002493.8E-6219266IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0009873Biological Processethylene-activated signaling pathway
GO:0010082Biological Processregulation of root meristem growth
GO:0010119Biological Processregulation of stomatal movement
GO:0010150Biological Processleaf senescence
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0031537Biological Processregulation of anthocyanin metabolic process
GO:0080022Biological Processprimary root development
GO:0080036Biological Processregulation of cytokinin-activated signaling pathway
GO:0080113Biological Processregulation of seed growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 666 aa     Download sequence    Send to blast
MAALQRIVQS SGGSGYGSSR AADVAVPDQF PAGLRVLVVD DDITCLRILE QMLRRCLYNV  60
TTCSQAAVAL DILRERKGCF DVVLSDVHMP DMDGFKLLEH IGLEMDLPVI TDGRVSAVMR  120
GIRHGACDYL IKPIREEELK NIWQHVVRKR WNENKEHENS GSLEETDHHK RGSDEIEYAS  180
SVNEGTEGTF KAQRKRISAK EEDDGELESD DPSTTKKPRV VWSVELHQQF VSAVNQLGID  240
KAVPKRILEL MNVPGLTREN VASHLQEINL QKFRLYLKRL NGVSQQGGIT NSFCAPIETN  300
VKLGSLGRFD IQALAASGQI PPQTLAALHA ELLGRPTGNL VTAVDQPALL QATLQGPKCI  360
PADHGVAFGQ QLVKCQSNVP ENLPQSIISV DDASTGFGVW ASNSLGAVAS TSNLGGLNPQ  420
NGNMLMDILH QQQQKQQNQQ SQQQSTLSET SRSISVQPSC LVVPSRSSAS FQAGNSPASV  480
NQSCSFNRGA VVDYSLLSSQ SNNSSLNMGQ ISDGDIKTTA VITGYLAPGS LSPSASSCSV  540
TADNTSSQQV QNSNIAFRAA RQVPGLVSNV GDIQGSYGAK SGEVFDLGSL RNHGFMGKGN  600
CIPSRLAVDE FESPMNNLNY GNIYLDNNAN KVKEEPNLEF VENAKVGIPM YQQYAPNDLM  660
SVFTD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A3e-20213281164ARR10-B
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.15030.0flower| stem
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00054PBMTransfer from AT4G16110Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006469257.10.0two-component response regulator ORR21 isoform X1
RefseqXP_006469258.10.0two-component response regulator ORR21 isoform X1
RefseqXP_006469259.10.0two-component response regulator ORR21 isoform X1
SwissprotA2XE311e-160ORR21_ORYSI; Two-component response regulator ORR21
SwissprotQ8H7S71e-160ORR21_ORYSJ; Two-component response regulator ORR21
TrEMBLA0A067F0780.0A0A067F078_CITSI; Two-component response regulator
STRINGXP_006469257.10.0(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G16857.11e-118response regulator 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]