PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g005927m
Common NameCISIN_1g005927mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family FAR1
Protein Properties Length: 670aa    MW: 77122.9 Da    PI: 7.6131
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g005927mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR165.71.2e-2037120490
               FAR1   4 neYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                        n+YA + GFs+rk + ++   +g+i +r+fvCskeg++ +e+     +r +r etrtgCk  ++ + + +g+w++++++ eHnHela
  orange1.1g005927m  37 NNYAFRKGFSLRKGHVRRD-ASGNIRQRDFVCSKEGFPVDEDLC-AVKRCNRLETRTGCKVLMRFTVS-NGVWVISHINFEHNHELA 120
                        89*************9998.8888****************9998.999*******************9.****************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.5E-1737120IPR004330FAR1 DNA binding domain
PfamPF105512.5E-26237330IPR018289MULE transposase domain
PROSITE profilePS509669.792520552IPR007527Zinc finger, SWIM-type
PfamPF044343.1E-6526549IPR007527Zinc finger, SWIM-type
SMARTSM005751.1E-4527554IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 670 aa     Download sequence    Send to blast
MDHSNSGKEA LEGIGNDGEL KVGTEVKSDA EAYNLCNNYA FRKGFSLRKG HVRRDASGNI  60
RQRDFVCSKE GFPVDEDLCA VKRCNRLETR TGCKVLMRFT VSNGVWVISH INFEHNHELA  120
KPEERQFLRS CRKIFEASGG VDVGRRRTKP LSYLGNDFGG DRNVQFAKKD MGNYLPREMG  180
NMMEPGDVQG LLNYFRRKKC EDPSFFYAVQ VNQLNQATNF FWRDGRSKLD YDCFGDVVSF  240
DATFRLNKYN LICAPFVGVN HHWKNMLFGC AFLLDESTHS YVWLFESFLE SMGNTQPKTI  300
FTNENEAMSK AIETVFMKTR HRLSTGHIVK DARRNLANQF ANLEFMKYLN KCFYECHDET  360
EFQVSWDDMI NKFSLGDHLW LKKLYSLRDK WCLVFNSDTF SANIDSVQRS DSIDTVFHQV  420
STKRMDVISF VQHFEEKTKE MHLDELEDDH FCKHVVPRLQ VWNGILNHAV YVYTSKIFNF  480
FEMELLGCMG VRMKEVCKDG EVCIYEAIEE GQQKVCKINY NLSTQDISCS CKLFERMGIL  540
CRHALKAFDF NNLTQIPVQY ILKRWTKEAK KGIVVRVSNE RHGLSSNTVK SVQSLRLSEL  600
MHMGSNVYSI ASLSDSGTKI VKEKLAEAME LLEKDEEIVN RLAHAKKVDS SPSLNAISDI  660
WTMASLSQV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024196405.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A067E1420.0A0A067E142_CITSI; Uncharacterized protein
STRINGEMJ054390.0(Prunus persica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM11826253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-104FAR1-related sequence 5