PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g005861m
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family STAT
Protein Properties Length: 674aa    MW: 75167.6 Da    PI: 6.6972
Description STAT family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g005861mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1STAT192.35.3e-602463641119
               STAT   1 ldvvllnalgqpvekdvevvasLlyadsglvveksddaeapLLisydGvefssedrplkllrGrasfklkisqLsskcdnrLfrikfeipkl 92 
                        ldvvllna+gqpv+k+ve+ a+Llyad+g++vek++d eapLL+sydG+ef+++drp+kll+GrasfklkisqLsskcdnrLf+i+fe+pkl
  orange1.1g005861m 246 LDVVLLNAFGQPVNKEVEITAALLYADNGSLVEKTSDGEAPLLTSYDGIEFPTYDRPSKLLNGRASFKLKISQLSSKCDNRLFCIRFEVPKL 337
                        8******************************************************************************************* PP

               STAT  93 kkypfleavskpirCisrsrntrsssl 119
                          +pfle++s pirCisr+r+ r+ s+
  orange1.1g005861m 338 VGFPFLEVLSYPIRCISRTRTIRTFSV 364
                        **********************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.505.101.3E-5626667IPR000980SH2 domain
SuperFamilySSF555503.62E-6626666IPR000980SH2 domain
PROSITE profilePS500018.892630673IPR000980SH2 domain
Sequence ? help Back to Top
Protein Sequence    Length: 674 aa     Download sequence    Send to blast
MGENVIKGED YYLLKDLRFK IEGDEEGFSL CFWVYLMKST TFSATLISQD CCGSKCNASL  60
WLVHHASGLW LGCGKFSVFK VDIGGNAPFL ALNEKKILML FPFISLHKEA PDPGKSAPLT  120
ELQHASMDTE FPLESWIHVG CRVSTDSVQL HIDGEIVAEK PVSSSFCKGS MSNSRTKITL  180
VGSNMQGYVH DAKILPLNLS IKDHYHKDPP LLLSIDTSSA SEIEEDSDGV WSIVGGKASC  240
RRIFSLDVVL LNAFGQPVNK EVEITAALLY ADNGSLVEKT SDGEAPLLTS YDGIEFPTYD  300
RPSKLLNGRA SFKLKISQLS SKCDNRLFCI RFEVPKLVGF PFLEVLSYPI RCISRTRTIR  360
TFSVPFKRTP AAIHPTNGSQ SCGFDDGSLK IHHNTVLEAK PSPSSKRVRL EQEKISAMEQ  420
LDGECSPHPL TANKAEGAFA KGLDGTHENT EDAGISPADY ESKGVRNVAL KNSGKSVSDL  480
TIFKYCLGGL ADRSHLLKEI VTSFSDEEIL EFAHQVSIYT GCSHHRFQIM TAKRLIEEGR  540
NAWNLISQNN PHVHWDCAVF EIEEQFKKIS CCSTRPLSHQ DFELLRRIAG CRDFLAQENF  600
EKLWCWLYPV AFTLSSDWIN KTWRSTSPKW IEGFITKEEA EYSLQGPRGL QEPGTFVLRF  660
PTSRTGRTQM QVV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024045095.10.0SH2 domain-containing protein A isoform X2
TrEMBLA0A2H5PRP00.0A0A2H5PRP0_CITUN; Uncharacterized protein
STRINGXP_006442321.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM52052645
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78540.10.0SH2 domain protein B