PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g005811m
Common NameCISIN_1g005715mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family BES1
Protein Properties Length: 677aa    MW: 76046.3 Da    PI: 6.1787
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g005811mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822152.92.5e-47642042133
             DUF822   2 gsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyr...kgskpl...eeaeaagssas 87 
                        g+g+k+++kE+E++k+RER+RRai+++++aGLR++Gn++lp+raD+n+Vl+AL+reAGw+ve+DGttyr   ++++++   ++++aa + ++
  orange1.1g005811m  64 GKGKKEREKEKERTKLRERHRRAITSRMLAGLRQYGNFPLPARADMNDVLAALAREAGWTVEPDGTTYRlsnQSQSHHhlhQQMAAAAATTT 155
                        899******************************************************************77733333344644444433333 PP

             DUF822  88 .aspesslq..sslkssalaspvesysaspksssfpspssldsislasa 133
                         a p  s++  +s+k++++++ ve + ++++ ++++sp+s+ds+ + + 
  orange1.1g005811m 156 aAFPVRSVEspLSVKNCSVKASVECQPSVLRIDESLSPASFDSVVIPER 204
                        34444444435789*****************************999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056876.5E-4764208IPR008540BES1/BZR1 plant transcription factor, N-terminal
SuperFamilySSF514454.45E-159243673IPR017853Glycoside hydrolase superfamily
Gene3DG3DSA:3.20.20.806.1E-173246674IPR013781Glycoside hydrolase, catalytic domain
PfamPF013731.6E-85270643IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.1E-57283297IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.1E-57304322IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.1E-57326347IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.1E-57419441IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.1E-57492511IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.1E-57526542IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.1E-57543554IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.1E-57561584IPR001554Glycoside hydrolase, family 14
PRINTSPR007502.1E-57596618IPR001554Glycoside hydrolase, family 14
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000272Biological Processpolysaccharide catabolic process
GO:0048831Biological Processregulation of shoot system development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0016161Molecular Functionbeta-amylase activity
Sequence ? help Back to Top
Protein Sequence    Length: 677 aa     Download sequence    Send to blast
MNTIENIDEN PNQELLTQPP TQTQNQTQSH SRRPRGFAAT AAAAAAAAAA NNNSNSNNNN  60
ASSGKGKKER EKEKERTKLR ERHRRAITSR MLAGLRQYGN FPLPARADMN DVLAALAREA  120
GWTVEPDGTT YRLSNQSQSH HHLHQQMAAA AATTTAAFPV RSVESPLSVK NCSVKASVEC  180
QPSVLRIDES LSPASFDSVV IPERDSRGGE FNASTSPINN SVECLEADQL IQDVRAGEHE  240
DDFTGTPYIP VYVMLANHVI NNFCQLVDPE LIRQEISHMK ALNVDGVIVN CWWGIVEGWN  300
PQKYAWSGYR ELFNIIREFN LKVQVVMAFH EYGANDSGDA WISLPQWVME IGKGNQDIFF  360
TDREGRRNTE CLSWGVDKER VLNGRTGIEV YFDFMRSFRT EFDDLFVAGL ICAVEIGLGP  420
SGELKYPSLS ERMGWRYPGI GEFQCYDRYL QQSLRKAAKL RGHSFWARGP DNAGQYNSLP  480
HETGFFCERG DYDSYYGRFF LNWYAQTLID HADNVLSLAS LAFEETKIIV KVPGVYWWYK  540
TASHAAELTA GYYNPSNQDG YAPVFEVLKK HSVTMKFVCA VPSLQDQEAL ADPEGLSWQV  600
LNLAWDRGLA VAGENALSCY DREGCMRVVE MAKPRNDPDR RHFSFFMYQQ PSSLLQGTIC  660
FSDLGYVIKC MHGKKS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wdq_A1e-12324863511401Beta-amylase
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.105700.0fruit
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00543DAPTransfer from AT5G45300Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX1396980.0JX139698.1 Citrus trifoliata beta-amylase 7 (BAM7) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006432891.10.0beta-amylase 8
RefseqXP_006494107.10.0beta-amylase 8
SwissprotQ9FH800.0BAM8_ARATH; Beta-amylase 8
TrEMBLA0A067DKX50.0A0A067DKX5_CITSI; Beta-amylase
STRINGXP_006494107.10.0(Citrus sinensis)
STRINGXP_006432891.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45300.10.0beta-amylase 2
Publications ? help Back to Top
  1. Soyk S, et al.
    The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation.
    Plant Cell, 2014. 26(4): p. 1746-1763
    [PMID:24748042]