PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g005562m
Common NameCISIN_1g002489mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family B3
Protein Properties Length: 692aa    MW: 75212.1 Da    PI: 7.0345
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g005562mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.51.2e-18142241198
                        EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                        f+k l+ sd+++ grlvlpkk+ae++   ++++e+  l+++d++g++W +++++  +++s++yvl+ G     +  +L++gD+v+F++ +  
  orange1.1g005562m 142 FEKMLSASDAGRIGRLVLPKKCAEAYfpPISQPEGLPLKVQDSKGKEWIFQFRFwpNNNSRMYVLE-GVTPCIQNMQLQAGDIVTFSRLE-P 231
                        89**************************555566778***************9989999999***9.********************766.7 PP

                        EE..EEEEE- CS
                 B3  89 efelvvkvfr 98 
                        e++lv+++++
  orange1.1g005562m 232 EGKLVMGFRK 241
                        7777777776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.9E-31138248IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.11E-19139241IPR015300DNA-binding pseudobarrel domain
CDDcd100173.68E-22140241No hitNo description
SMARTSM010191.0E-19142243IPR003340B3 DNA binding domain
PROSITE profilePS5086311.293142243IPR003340B3 DNA binding domain
PfamPF023625.3E-16142241IPR003340B3 DNA binding domain
PROSITE profilePS5105013.781370420IPR011124Zinc finger, CW-type
PfamPF074966.1E-11375417IPR011124Zinc finger, CW-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 692 aa     Download sequence    Send to blast
MNGGLKSGSR DIPENANAGS NCDMQPSSCL NKPQQSSTLK DDSSTPHFGL AVSYASPSET  60
NSQIGVSGSH LRPVVQPPLV KQFHGNLPNG ADSLGETQVR NGRPRVDARG RSQLLPRYWP  120
RFTDQDLQQI SGDSNSVITP LFEKMLSASD AGRIGRLVLP KKCAEAYFPP ISQPEGLPLK  180
VQDSKGKEWI FQFRFWPNNN SRMYVLEGVT PCIQNMQLQA GDIVTFSRLE PEGKLVMGFR  240
KASSASASDQ DNEANKAGTG IPANGHAELA DPSSWSKVDK SGYIATEALG AKSSISRKRK  300
NTTLGSKSKR LKIENEDVIE LKLTWEEAQG LLRPPPNNVP SVVVIEGYEF EEYEDAPILG  360
KPTIFATDNV GEKIQWVQCE DCSKWRKVPA NARLPSKWTC SGNLWDPERS VCSVAQELRE  420
EQLEDLIAPN NPASSKKLKA AKQEPDCVEA LEGLDTLANL AILGEGEGLT ASSQATTKHP  480
RHRPGCSCIV CIQPPSGKGP KHKQTCTCNV CLTVKRRFHT LMLRREKKQS EKDAETSRKK  540
QQQQKLPVPE KSADDDPLSC SKTGNNSPNE KKVVSEGSDD DSSRIKSSTS PFKGQIDLNI  600
QPEREEELSP GSDSGSMIRL LQDATEKYLR QQRLSSSGVN TSSVDNEGLQ GGVTGEKISN  660
GITLDGSHQD TDEDHHGSLS VKASASISAT G*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5yzy_C2e-651202451126B3 domain-containing transcription repressor VAL1
5yzz_C2e-651202451126B3 domain-containing transcription repressor VAL1
5z00_C2e-651202451126B3 domain-containing transcription repressor VAL1
5z00_G2e-651202451126B3 domain-containing transcription repressor VAL1
5z00_K2e-651202451126B3 domain-containing transcription repressor VAL1
5z00_M2e-651202451126B3 domain-containing transcription repressor VAL1
6j9a_A1e-651202452127B3 domain-containing transcription repressor VAL1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1297311KRKNTTLGSKSKRLK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKR4920701e-135KR492070.1 UNVERIFIED: Citrus sinensis clone 114-1c mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006467888.10.0B3 domain-containing protein Os07g0563300 isoform X2
RefseqXP_024046942.10.0B3 domain-containing protein Os07g0563300 isoform X2
SwissprotQ0D5G40.0Y7633_ORYSJ; B3 domain-containing protein Os07g0563300
TrEMBLA0A067GKC60.0A0A067GKC6_CITSI; Uncharacterized protein
STRINGXP_006467887.10.0(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32010.11e-165HSI2-like 1