PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g005503m

Common Name

CISIN_1g005514mg

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

TALE

Protein Properties

Length: 694aa MW: 76100.8 Da PI: 7.3269

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g005503m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	31.1	3.9e-10	381	418	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ ++++ LAk++gLt +qV++WF N R + orange1.1g005503m 381 FEHflHPYPKDSDKQMLAKQTGLTRSQVSNWFINARVR 418 554459******************************88 PP
2	BELL	122.6	1.6e-39	245	316	1	72
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 erqe+q+kkakL+++l+eV++rY+qy++q+q+vissFe++ag++sak Yt+lAlk+iS++FrcLkdai++qi orange1.1g005503m 245 ERQEIQMKKAKLINMLDEVEQRYRQYHHQMQIVISSFEQAAGIESAKTYTALALKTISKQFRCLKDAITGQI 316 79*********************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	2.6E-63	168	314	IPR006563	POX domain
Pfam	PF07526	2.6E-49	173	313	IPR006563	POX domain
PROSITE profile	PS50071	12.39	359	422	IPR001356	Homeobox domain
SMART	SM00389	4.3E-10	362	426	IPR001356	Homeobox domain
CDD	cd00086	1.39E-12	362	423	No hit	No description
SuperFamily	SSF46689	6.42E-17	363	428	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	9.9E-29	365	428	IPR009057	Homeodomain-like
Pfam	PF05920	1.3E-18	379	418	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009610	Biological Process	response to symbiotic fungus
GO:0009737	Biological Process	response to abscisic acid
GO:0010197	Biological Process	polar nucleus fusion
GO:0010201	Biological Process	response to continuous far red light stimulus by the high-irradiance response system
GO:0005634	Cellular Component	nucleus
GO:0005737	Cellular Component	cytoplasm
GO:0003677	Molecular Function	DNA binding
GO:0042803	Molecular Function	protein homodimerization activity
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 694 aa Download sequence Send to blast
MATYFHGNPA EFQAPDGLQT LVLMNPTTYV QQQQQQHQQF SDTNHPPAPA PAHNSLIFLN 60 SSAISPHAPP PPSHTQHFVG IPTTAHQDDS ISPLHGLLPR VHYNLYNPNY PSPPARDTPR 120 AKQGLSLSLS SHQHPAFGSQ GGQTVSGEDI RVSGGSASSG SGVTNGVSGM QSVLLSSKYL 180 KAAQELLDEV VNVNNSGISN KSEFSKKGSG NNNSNINKVI GESSAAAGDD GQSAGKRAAE 240 LTTAERQEIQ MKKAKLINML DEVEQRYRQY HHQMQIVISS FEQAAGIESA KTYTALALKT 300 ISKQFRCLKD AITGQIKAAN KMLGEEDCVG SKIEGSRLKF VDHHLRQQRA LQQLGMIQHN 360 AWRPQRGLPE RSVSVLRAWL FEHFLHPYPK DSDKQMLAKQ TGLTRSQVSN WFINARVRLW 420 KPMVEEMYLE EIKDQEQNGS EDKTSKSEHN EDSASKSTAA QEKNLVKETQ NSKSFKSSED 480 NLTNQNVHSM ISMSTIATSP IGGGNARNHS GFSLIGSSEL EGLTQGSPKK PRNSDMNMML 540 SPSNVPSISI DVKPGGNEAT NDLMPMKFDD DDRQSRDGYS FIGNQMNFIQ GFGQYPIGEI 600 GRFDAEQFTP RFSGNGVSLT LGLPHCENLS LSATHQNFLP SQNIQLGRRV EIGEPNEFGT 660 INTQSPHASA AYENMNIQNR KRFAAQLLPD FVA*

Sequence ? help Back to Top

Protein Sequence Length: 694 aa Download sequence Send to blast

MATYFHGNPA EFQAPDGLQT LVLMNPTTYV QQQQQQHQQF SDTNHPPAPA PAHNSLIFLN  60
SSAISPHAPP PPSHTQHFVG IPTTAHQDDS ISPLHGLLPR VHYNLYNPNY PSPPARDTPR  120
AKQGLSLSLS SHQHPAFGSQ GGQTVSGEDI RVSGGSASSG SGVTNGVSGM QSVLLSSKYL  180
KAAQELLDEV VNVNNSGISN KSEFSKKGSG NNNSNINKVI GESSAAAGDD GQSAGKRAAE  240
LTTAERQEIQ MKKAKLINML DEVEQRYRQY HHQMQIVISS FEQAAGIESA KTYTALALKT  300
ISKQFRCLKD AITGQIKAAN KMLGEEDCVG SKIEGSRLKF VDHHLRQQRA LQQLGMIQHN  360
AWRPQRGLPE RSVSVLRAWL FEHFLHPYPK DSDKQMLAKQ TGLTRSQVSN WFINARVRLW  420
KPMVEEMYLE EIKDQEQNGS EDKTSKSEHN EDSASKSTAA QEKNLVKETQ NSKSFKSSED  480
NLTNQNVHSM ISMSTIATSP IGGGNARNHS GFSLIGSSEL EGLTQGSPKK PRNSDMNMML  540
SPSNVPSISI DVKPGGNEAT NDLMPMKFDD DDRQSRDGYS FIGNQMNFIQ GFGQYPIGEI  600
GRFDAEQFTP RFSGNGVSLT LGLPHCENLS LSATHQNFLP SQNIQLGRRV EIGEPNEFGT  660
INTQSPHASA AYENMNIQNR KRFAAQLLPD FVA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3k2a_A	4e-16	368	426	5	63	Homeobox protein Meis2
3k2a_B	4e-16	368	426	5	63	Homeobox protein Meis2
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Csi.1717	0.0	flower\| fruit\| leaf\| stem\| vegetative meristem

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006481599.1	0.0	BEL1-like homeodomain protein 1
Swissprot	Q9SJ56	0.0	BLH1_ARATH; BEL1-like homeodomain protein 1
TrEMBL	A0A067FTF2	0.0	A0A067FTF2_CITSI; Uncharacterized protein
STRING	XP_006481599.1	0.0	(Citrus sinensis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35940.3	1e-171	BEL1-like homeodomain 1

Link Out ? help Back to Top
Phytozome	orange1.1g005503m

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]