PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g005491m
Common NameCISIN_1g005491mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ARF
Protein Properties Length: 695aa    MW: 77864.9 Da    PI: 7.0706
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g005491mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.71.1e-23123222197
                        EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                        f kvlt sd++++g +++ +k+a+e+     +++++ +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD++vF   + 
  orange1.1g005491m 123 FSKVLTASDTSTHGGFSVLRKHATEClppldMNQSTPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDTFVFL--RG 212
                        88****************************9445555669************************************************..44 PP

                        SEE..EEEEE CS
                 B3  88 sefelvvkvf 97 
                        +++el+v+v+
  orange1.1g005491m 213 ENGELHVGVR 222
                        99999**996 PP
2Auxin_resp106.43.1e-35249332183
         Auxin_resp   1 aahaastksvFevvYnPr..astseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                        a+ha++t+++F v+Y+Pr  + ts+F+++++k+++a+++k++vGmR+km+fe+eds+err+sGtvvgv+d++p +W++SkWrsLk
  orange1.1g005491m 249 ASHAVATQTMFVVYYKPRiiTRTSQFIISLNKYLEAVNNKFAVGMRYKMRFEGEDSPERRFSGTVVGVEDFSP-HWKDSKWRSLK 332
                        789***************44478**************************************************.*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.8E-42114238IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.49E-38117252IPR015300DNA-binding pseudobarrel domain
CDDcd100175.89E-21121223No hitNo description
PfamPF023623.2E-21123222IPR003340B3 DNA binding domain
PROSITE profilePS5086312.153123225IPR003340B3 DNA binding domain
SMARTSM010193.2E-21123225IPR003340B3 DNA binding domain
PfamPF065079.7E-32249332IPR010525Auxin response factor
PfamPF023092.0E-13560671IPR033389AUX/IAA domain
SuperFamilySSF542772.35E-14577658No hitNo description
PROSITE profilePS5174526.665582663IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 695 aa     Download sequence    Send to blast
MANRLGSLSQ PSSNSDDLYR ELWKACAGPL VDVPKQGQRV YYFPQGHMEQ LEASTNQELN  60
QRIPLFRLPS KILCRVVNIH LMAEQETDEV YAQITLLPEP SQNEPTTPDP CPADSPRPKV  120
HSFSKVLTAS DTSTHGGFSV LRKHATECLP PLDMNQSTPT QELVAKDLHG YEWRFKHIFR  180
GQPRRHLLTT GWSTFVTSKR LVAGDTFVFL RGENGELHVG VRCLARQQSS MPSSVISSQS  240
MHLGVLATAS HAVATQTMFV VYYKPRIITR TSQFIISLNK YLEAVNNKFA VGMRYKMRFE  300
GEDSPERRFS GTVVGVEDFS PHWKDSKWRS LKVQWDEPAS ITRPDRVSPW EIEPFVASAT  360
PNLVQPVLAK NKRPRLSMEV PPLDLPSAAS APWSARLAQS HNLTQLSVTA EDKRIDNHVA  420
WHHKHSDFSS NSNFMSRTQS DGEWLTSPRV KFSQQLFQEA IDDNKNISAW PAHSGHSTPH  480
PSKPNNDTLL EQVETGRKTE TGTSCRLFGI ELINHATSSA PSEKVPVSSL TTEGHIISTI  540
SAAADSDGKS DIAKEFKEKK QEQVQVSPKE SQSKQSCLTS NRSRTKVQMQ GVAVGRALDL  600
TTLVGYDHLI DELEEMFDIK GQLHTRTKWE IVYTDDEGDM MLVGDDPWHE FCNMVKRIFI  660
CSSQDVKKMS PGSKLPMFSI EGEDILLSSD SAEK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1731535516355Auxin response factor 1
4ldw_A1e-1731535516355Auxin response factor 1
4ldw_B1e-1731535516355Auxin response factor 1
4ldx_A1e-1731535516355Auxin response factor 1
4ldx_B1e-1731535516355Auxin response factor 1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the whole plant. {ECO:0000269|PubMed:10476078}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024044180.10.0auxin response factor 9 isoform X1
SwissprotQ9XED80.0ARFI_ARATH; Auxin response factor 9
TrEMBLA0A067GAH00.0A0A067GAH0_CITSI; Auxin response factor
STRINGXP_006476350.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM27642762
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.10.0auxin response factor 9