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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | orange1.1g005465m | ||||||||
| Common Name | CISIN_1g005465mg | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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| Family | ARR-B | ||||||||
| Protein Properties | Length: 696aa MW: 77072.9 Da PI: 7.1453 | ||||||||
| Description | ARR-B family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | G2-like | 89.7 | 2.6e-28 | 199 | 252 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
kpr++W+ eLH++Fv av+qL G++kA+Pk+il+lm+v+ Lt+e+v+SHLQkYRl
orange1.1g005465m 199 KPRVVWSVELHRKFVAAVNQL-GIDKAVPKKILDLMNVEKLTRENVASHLQKYRL 252
79*******************.********************************8 PP
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| 2 | Response_reg | 76.3 | 1.1e-25 | 17 | 125 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHH CS
Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedaleal 90
vl vdD+p+ + ll+++l++ +y +v++++++ al+ll+e++ +Dl++ D+ mp+mdG++ll+ e++lp+i+++++g+++++ + +
orange1.1g005465m 17 VLAVDDDPTCLLLLETLLRRCQY-HVTTTSQAITALKLLRENKnkFDLVISDVHMPDMDGFKLLELVGL-EMDLPVIMLSGNGDPKLVMKGI 106
799********************.***************888888*******************87754.558******************* PP
HTTESEEEESS--HHHHHH CS
Response_reg 91 kaGakdflsKpfdpeelvk 109
Ga d+l Kp+ +eel +
orange1.1g005465m 107 THGACDYLLKPVRIEELKN 125
****************987 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PIRSF | PIRSF036392 | 1.6E-169 | 1 | 667 | IPR017053 | Response regulator B-type, plant |
| SuperFamily | SSF52172 | 4.13E-36 | 13 | 136 | IPR011006 | CheY-like superfamily |
| Gene3D | G3DSA:3.40.50.2300 | 1.5E-41 | 14 | 150 | No hit | No description |
| SMART | SM00448 | 4.3E-31 | 15 | 127 | IPR001789 | Signal transduction response regulator, receiver domain |
| PROSITE profile | PS50110 | 42.328 | 16 | 131 | IPR001789 | Signal transduction response regulator, receiver domain |
| Pfam | PF00072 | 6.7E-23 | 17 | 125 | IPR001789 | Signal transduction response regulator, receiver domain |
| CDD | cd00156 | 1.88E-22 | 18 | 130 | No hit | No description |
| SuperFamily | SSF46689 | 7.17E-20 | 196 | 256 | IPR009057 | Homeodomain-like |
| Gene3D | G3DSA:1.10.10.60 | 2.1E-30 | 196 | 257 | IPR009057 | Homeodomain-like |
| PROSITE profile | PS51294 | 12.269 | 196 | 255 | IPR017930 | Myb domain |
| TIGRFAMs | TIGR01557 | 5.0E-25 | 199 | 252 | IPR006447 | Myb domain, plants |
| Pfam | PF00249 | 1.2E-6 | 201 | 251 | IPR001005 | SANT/Myb domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0009414 | Biological Process | response to water deprivation | ||||
| GO:0010082 | Biological Process | regulation of root meristem growth | ||||
| GO:0010380 | Biological Process | regulation of chlorophyll biosynthetic process | ||||
| GO:0031537 | Biological Process | regulation of anthocyanin metabolic process | ||||
| GO:0048367 | Biological Process | shoot system development | ||||
| GO:0080022 | Biological Process | primary root development | ||||
| GO:0080036 | Biological Process | regulation of cytokinin-activated signaling pathway | ||||
| GO:0080113 | Biological Process | regulation of seed growth | ||||
| GO:0005634 | Cellular Component | nucleus | ||||
| GO:0016021 | Cellular Component | integral component of membrane | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 696 aa Download sequence Send to blast |
MTVEHVNGDQ FPSGLRVLAV DDDPTCLLLL ETLLRRCQYH VTTTSQAITA LKLLRENKNK 60 FDLVISDVHM PDMDGFKLLE LVGLEMDLPV IMLSGNGDPK LVMKGITHGA CDYLLKPVRI 120 EELKNIWQHV VRRKKIDAKD QNNSDNQDKP HNGSGQAEGM GNSDQNGKLN KKRKDQNEDE 180 DDEDDEDDHN HEDPTTQKKP RVVWSVELHR KFVAAVNQLG IDKAVPKKIL DLMNVEKLTR 240 ENVASHLQKY RLYLKRISCV ANQQANMVAA LGSSDPSYLR MSSVNGLGNY HTVGGPGQFQ 300 NSTFRSFPAS GMLGRLNAPA GLGMHGLPSS GMIPMRHAQN SDNTTNDQGK FHPALLPGSH 360 SGNILQGMPT SLELDQLQLN KNITSISELP NTKDNTTFHV SSGFPDARIG FGRSTNPLLD 420 VNNNPLFLEG HPQEAHSNKM FGNQSLMSLN SGSSSRLPDH GRCNDNWSSA VQSSGIQPNS 480 FSLGGDYKQP TLHPGHLRDN LSTMALPIGN SPCDVSSLHP LSNRFQDPKA DLQFQAVQDA 540 PCRSNVMFSP LNSAVSINGD VGPLGQCLDT NKTFFHRSNE FDSLGQSNFV DHFSMKINEV 600 QRSSMQASSN LKEGYLMGQQ KTQGSYISTS VDSLEDLFMS SMVKEVRSYN LAFSSCQNAF 660 INSFYTTLTI IVKNLLNLFN CLLLWFRTKR RKFSI* |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 1irz_A | 2e-26 | 195 | 258 | 1 | 64 | ARR10-B |
| Search in ModeBase | ||||||
| Expression -- Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| Uniprot | DEVELOPMENTAL STAGE: Detected immediately after seed germination. {ECO:0000269|PubMed:17363254}. | |||||
| Uniprot | TISSUE SPECIFICITY: Detected in the whole plant. Predominantly expressed in leaves. Expressed at the root transition zone (PubMed:17363254). {ECO:0000269|PubMed:15173562, ECO:0000269|PubMed:17363254}. | |||||
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. Could directly activate some type-A response regulators in response to cytokinins. Involved in the root-meristem size determination through the regulation of cell differentiation (PubMed:17363254). Involved in activating SHY2 during meristem growth and controls PIN expression via activation of SHY2 (PubMed:20605455). {ECO:0000250|UniProtKB:Q940D0, ECO:0000269|PubMed:17363254, ECO:0000269|PubMed:20605455}. | |||||
| Regulation -- PlantRegMap ? help Back to Top | ||||||
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| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_006483453.1 | 0.0 | two-component response regulator ARR12 | ||||
| Swissprot | P62598 | 1e-150 | ARR12_ARATH; Two-component response regulator ARR12 | ||||
| TrEMBL | A0A067FMW8 | 0.0 | A0A067FMW8_CITSI; Two-component response regulator | ||||
| STRING | XP_006450308.1 | 0.0 | (Citrus clementina) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Malvids | OGEM1981 | 28 | 79 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT2G25180.1 | 1e-141 | response regulator 12 | ||||
| Link Out ? help Back to Top | |
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| Phytozome | orange1.1g005465m |
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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