PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | orange1.1g005368m | ||||||||
Common Name | CISIN_1g005368mg, LOC102627122 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
|
||||||||
Family | ARF | ||||||||
Protein Properties | Length: 700aa MW: 77318 Da PI: 6.4343 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 71.9 | 8.2e-23 | 128 | 228 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 f+k+lt sd++++g +++ +k+a+e+ + ++ +++l +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD +vF + orange1.1g005368m 128 FCKILTASDTSTHGGFSVLRKHATEClppldmTLATP-TQELAAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDAFVFL--R 216 99**************************999744433.459************************************************..4 PP SSEE..EEEEE- CS B3 87 rsefelvvkvfr 98 +++el+v+v+r orange1.1g005368m 217 GENGELRVGVRR 228 49999*****98 PP | |||||||
2 | Auxin_resp | 102.7 | 4.8e-34 | 254 | 333 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aaha++t++ F v+Y+Pr+ s+F++ ++k+++a+++ +svGmRfkm+fe+eds+err++Gt+vgv d++ +Wp+SkWrsLk orange1.1g005368m 254 AAHAVKTSTLFIVYYKPRT--SQFIIGLNKYLEAVHHCFSVGMRFKMRFEGEDSPERRFTGTIVGVGDFSE-QWPGSKWRSLK 333 79****************6..9**********************************************888.*********96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 5.36E-40 | 117 | 257 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 2.9E-39 | 121 | 243 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 8.95E-20 | 126 | 228 | No hit | No description |
PROSITE profile | PS50863 | 11.899 | 128 | 230 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.7E-21 | 128 | 230 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 7.2E-21 | 128 | 228 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 4.1E-32 | 254 | 333 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 3.3E-10 | 571 | 672 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 2.55E-12 | 578 | 660 | No hit | No description |
PROSITE profile | PS51745 | 25.037 | 584 | 665 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 700 aa Download sequence Send to blast |
MAYVEPNFGC SLSSQGGPGS GDLYRELWKA CAGPLVEVPR NGERVYYFPQ GHIEQLEAST 60 NQELTHQEPL FDLPSKILCR VVHIELLAEQ ETDEVYAQIT LHPETDQTEP RSPDQCLPEP 120 PKQTVHSFCK ILTASDTSTH GGFSVLRKHA TECLPPLDMT LATPTQELAA KDLHGYEWRF 180 KHIFRGQPRR HLLTTGWSTF VTSKRLVAGD AFVFLRGENG ELRVGVRRLA HQQSSMPSSV 240 ISSQSMHLGV LATAAHAVKT STLFIVYYKP RTSQFIIGLN KYLEAVHHCF SVGMRFKMRF 300 EGEDSPERRF TGTIVGVGDF SEQWPGSKWR SLKIQWDEPA TVQRPERVSP WEIEPFVASA 360 PLNLAQPAVK SKRPRSIDIP ASEITTNSAA SAFWYQGSTQ SHDITQVVGA TEGQSSESQV 420 VRPMRQKEID STIINNSNDC SSRLAPEGIW PSSPHLNVSL NLFPDSTDDH RIVAAQSVLS 480 GYASSGRPGN TVIHEEVERG KKSEASLGCW LFGIDLKHNS NTAAPLGRKV VDPTTGTSGV 540 KGSARAASDF DASQNQDLKE VKRGMADVSR KETQNKQGSA ASTRTRTKVQ MQGIAVGRAV 600 DLTALKGYDD LFDELEKMFE IQGQLRPRDK WAVVFTDDEG DMMLAGDDQW PEFCKMVKKI 660 FIYSTEEVKN MATSSKPIAS SVEGEGTAIS LDSELKSET* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-174 | 14 | 356 | 7 | 355 | Auxin response factor 1 |
4ldw_A | 1e-174 | 14 | 356 | 7 | 355 | Auxin response factor 1 |
4ldw_B | 1e-174 | 14 | 356 | 7 | 355 | Auxin response factor 1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the whole plant. {ECO:0000269|PubMed:10476078}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006491295.1 | 0.0 | auxin response factor 18 isoform X1 | ||||
Swissprot | Q9XED8 | 0.0 | ARFI_ARATH; Auxin response factor 9 | ||||
TrEMBL | A0A067HEU1 | 0.0 | A0A067HEU1_CITSI; Auxin response factor | ||||
STRING | XP_006491295.1 | 0.0 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2764 | 27 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G61830.1 | 0.0 | auxin response factor 18 |
Link Out ? help Back to Top | |
---|---|
Phytozome | orange1.1g005368m |
Entrez Gene | 102627122 |