PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g005143m | ||||||||
Common Name | CISIN_1g002869mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 713aa MW: 78432 Da PI: 6.5569 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 65.9 | 5.6e-21 | 135 | 190 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q++eLe+lF+++++p++++r eL+k+l L++rqVk+WFqNrR+++k orange1.1g005143m 135 KKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMK 190 688999***********************************************999 PP | |||||||
2 | START | 203.4 | 9.1e-64 | 342 | 567 | 1 | 206 |
HHHHHHHHHHHHHHHHC-TT-EEEE.....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....E CS START 1 elaeeaaqelvkkalaeepgWvkss.....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....k 78 ela++a++elvk+a+ +ep+W +s + +n +e+l++f++ + + +ea+r++g+v+ ++ lve+l+d + +W e+++ + orange1.1g005143m 342 ELALAAMDELVKMAQTDEPLWIRSFegsgrQVLNHEEYLRTFTPCIGlkpngFVTEASRETGMVIINSLALVETLMDPN-RWAEMFPcmiaR 432 5899********************99*99999***********99989*9*9***************************.************ PP EEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEE CS START 79 aetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghsk 163 +t++vissg galqlm aelq+lsplvp R++ f+R+++q+ +g+w++vdvS+d ++ + + +v +++lpSg+++++++ng+sk orange1.1g005143m 433 TATTDVISSGmggtrnGALQLMHAELQVLSPLVPvREVNFLRFCKQHAEGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSK 524 ****************************************************************999************************* PP EEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 164 vtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 vtwveh++++++++h+l+++l+ sg+ +ga++wvatlqrqce+ orange1.1g005143m 525 VTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCEC 567 *****************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 9.84E-21 | 118 | 192 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.7E-21 | 127 | 192 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.248 | 132 | 192 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.2E-17 | 133 | 196 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.15E-18 | 134 | 192 | No hit | No description |
Pfam | PF00046 | 1.6E-18 | 135 | 190 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 167 | 190 | IPR017970 | Homeobox, conserved site |
PROSITE profile | PS50848 | 44.451 | 333 | 570 | IPR002913 | START domain |
SuperFamily | SSF55961 | 2.75E-34 | 335 | 567 | No hit | No description |
CDD | cd08875 | 1.42E-127 | 337 | 566 | No hit | No description |
SMART | SM00234 | 2.3E-47 | 342 | 567 | IPR002913 | START domain |
Pfam | PF01852 | 1.4E-55 | 342 | 567 | IPR002913 | START domain |
SuperFamily | SSF55961 | 4.87E-12 | 588 | 704 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009827 | Biological Process | plant-type cell wall modification | ||||
GO:0042335 | Biological Process | cuticle development | ||||
GO:0043481 | Biological Process | anthocyanin accumulation in tissues in response to UV light | ||||
GO:0048765 | Biological Process | root hair cell differentiation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 713 aa Download sequence Send to blast |
MSFGGFLENN ISTSSGGGGA RIVADISYTN NDNNNNNNMP TTTTLAHPRL LSSTPQPLSK 60 SMFNSPGLSL ALQQPNIDNQ GGGDLQLQRM GESFEGIIGR RSREDLLEHE SRSGSDNMDG 120 ASGDDLDAAD NPPRKKRYHR HTPQQIQELE SLFKECPHPD EKQRLELSKR LCLETRQVKF 180 WFQNRRTQMK TQLERHENSL LRQENDKLRA ENMSIRDAMR NPICTNCGGP AIIGDISLEE 240 QHLRIENARL KDELDRVCAL AGKFLGRPVS SMGPPPMPNS SLELGVGTIN GFGGLSSTVT 300 TTLPADFGTG ISNALPVVMP PNRSGPGVTG LDRSIERSMF LELALAAMDE LVKMAQTDEP 360 LWIRSFEGSG RQVLNHEEYL RTFTPCIGLK PNGFVTEASR ETGMVIINSL ALVETLMDPN 420 RWAEMFPCMI ARTATTDVIS SGMGGTRNGA LQLMHAELQV LSPLVPVREV NFLRFCKQHA 480 EGVWAVVDVS IDTIRETSGA PAFVNCRRLP SGCVVQDMPN GYSKVTWVEH AEYDESQVHQ 540 LYKPLIISGM GFGAQRWVAT LQRQCECLAI LMSTSVSARD HTAITAGGRR SMLKLAQRMT 600 DNFCAGVCAS TVHKWNKLNA GNVDEDVRVM TRKSVDDPGE PPGIVLSAAT SVWLPVSPQR 660 LFNFLRDERL RSEWDILSNG GPMQEMAHIA KGQDHGNCVS LLRASVSNLS HL* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Csi.1217 | 0.0 | fruit| vegetative meristem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, stems, leaves and floral buds. {ECO:0000269|PubMed:10402424}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269|PubMed:10402424}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00421 | DAP | Transfer from AT4G00730 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006445143.1 | 0.0 | homeobox-leucine zipper protein ANTHOCYANINLESS 2 isoform X1 | ||||
Refseq | XP_006491020.1 | 0.0 | homeobox-leucine zipper protein ANTHOCYANINLESS 2 isoform X1 | ||||
Swissprot | Q0WV12 | 0.0 | ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2 | ||||
TrEMBL | A0A067HDW9 | 0.0 | A0A067HDW9_CITSI; Uncharacterized protein | ||||
TrEMBL | V4U2U2 | 0.0 | V4U2U2_9ROSI; Uncharacterized protein | ||||
STRING | XP_006491020.1 | 0.0 | (Citrus sinensis) | ||||
STRING | XP_006445143.1 | 0.0 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00730.1 | 0.0 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g005143m |
Publications ? help Back to Top | |||
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