PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g005075m
Common NameCISIN_1g005075mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ARF
Protein Properties Length: 716aa    MW: 79134.1 Da    PI: 7.3478
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g005075mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.31.5e-23122223199
                        EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                        f k+lt+sd+++ g +++p+ +ae++         ++ +  t+  +d +g++W++++iyr++++r++lt+GW+ Fv+ ++L +gD++vF   
  orange1.1g005075m 122 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--TILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFL-- 209
                        89****************************996555555..89***********************************************.. PP

                        SSSEE..EEEEE-S CS
                 B3  86 grsefelvvkvfrk 99 
                        + +++ l+v+++r+
  orange1.1g005075m 210 RAENGDLCVGIRRA 223
                        4488999****997 PP

2Auxin_resp113.12.6e-37292375183
         Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                        aa+ a+++++FevvY+Prast+eF+vk++ v++al+++++ GmRfkmafetedss++++ +Gt+++v+ +dp+ Wp+S+Wr+L+
  orange1.1g005075m 292 AATLAANRQPFEVVYYPRASTPEFCVKASMVKAALQIRWCSGMRFKMAFETEDSSRISWfMGTISSVQVSDPLYWPDSPWRLLQ 375
                        68899*****************************************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.1E-37114225IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-29114225IPR015300DNA-binding pseudobarrel domain
CDDcd100174.84E-21121222No hitNo description
PfamPF023629.1E-22122223IPR003340B3 DNA binding domain
SMARTSM010191.7E-21122224IPR003340B3 DNA binding domain
PROSITE profilePS5086313.112122224IPR003340B3 DNA binding domain
PfamPF065072.2E-32292375IPR010525Auxin response factor
PROSITE profilePS5174516.297617709IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 716 aa     Download sequence    Send to blast
MITFMDSKEK LKEVEKCLDS QLWHACAGGM VQMPPVNSRV FYFPQGHAEH ACGPVDFRSC  60
RRIPPYILCR VSPIKFMADP ETDEVYAKIK LVPVSTNDPD FDNDDGIAGI HSNETQDKPA  120
SFAKTLTQSD ANNGGGFSVP RYCAETIFPR LDYSADPPVQ TILAKDVHGE TWKFRHIYRG  180
TPRRHLLTTG WSTFVNHKKL VAGDSIVFLR AENGDLCVGI RRAKRGIGGG PEVTSGWNGN  240
CVTPYGGFSA FLREDDNKLM RNGIGNVNGP SSNNGNNLMA KGKVRPESVI EAATLAANRQ  300
PFEVVYYPRA STPEFCVKAS MVKAALQIRW CSGMRFKMAF ETEDSSRISW FMGTISSVQV  360
SDPLYWPDSP WRLLQVTWDE PDLLQNVKRV SPWLVELVSN MPTIHLSPFS PPRKKSRLPQ  420
PPDFPLDGQL PMPSFSGSLL GPNSPFGCLP DNTPAGMQGA RHAHYGLSLS DLHLNKLQSG  480
LSPAGFPPFD RAAKPTRASN SPILQKPSMS ENISCLLTMS HSTQPSKKAD DLKTPQLVLF  540
GKPILTEQQM SHSCSGDTVS PVRTGNSSSE GNLDKLTNFS DGSGSALQQQ GLPDRSFCEV  600
FQWYKDNRQE TEPSLETGHC KVFMESEDVG RTLDLSLLGS YDELYKKLAE MFGIENAETL  660
SHLLYRDVTG AVKHIGDEPF RFQLFRLLAI FSLYTIISLK GFNLICFVVA VAVTL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A3e-801839651388Auxin response factor 5
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.31180.0callus| fruit
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006481465.10.0auxin response factor 18-like
RefseqXP_024955951.10.0auxin response factor 18-like
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A067DQ580.0A0A067DQ58_CITSI; Auxin response factor
STRINGXP_006481465.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58027130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]