PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g005060m
Common NameCISIN_1g005060mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ARF
Protein Properties Length: 717aa    MW: 79363.2 Da    PI: 6.8418
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g005060mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B382.24.9e-26149250199
                        EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                        f k+ltpsd++++g +++pk++a+e+      +++++  ++l+ +d++g +W++++iyr++++r++lt+GW+ Fv +++L +gD+++F +  
  orange1.1g005060m 149 FSKKLTPSDTSTHGGFSVPKRHADEClppldmSKDPPL-QELVAKDLHGLEWRFRHIYRGQPKRHLLTSGWSVFVTSKKLVAGDVCIFLR-- 237
                        88*****************************7445545.59************************************************3.. PP

                        SSEE..EEEEE-S CS
                 B3  87 rsefelvvkvfrk 99 
                          ++el+v+v+r+
  orange1.1g005060m 238 GGDGELRVGVRRA 250
                        479999****996 PP
2Auxin_resp99.45.1e-33275357183
         Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                        a ha+st++ F+v+Y+P++ ++eF v++++++k+ ++ +s+G+Rf+m fe+e+++ +r++Gtvvg++d+d +rWp S+Wr+Lk
  orange1.1g005060m 275 AFHAISTGTRFTVYYHPWTRPAEFLVPFSQYMKSAEIDYSIGTRFRMVFEGEECADQRIAGTVVGTEDVDHIRWPASEWRCLK 357
                        689******************************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.7E-35142268IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.7E-40145263IPR015300DNA-binding pseudobarrel domain
CDDcd100174.42E-24148249No hitNo description
PfamPF023621.7E-23149250IPR003340B3 DNA binding domain
SMARTSM010191.9E-25149251IPR003340B3 DNA binding domain
PROSITE profilePS5086312.887149251IPR003340B3 DNA binding domain
PfamPF065071.9E-30275357IPR010525Auxin response factor
PROSITE profilePS5174520.535617699IPR000270PB1 domain
SuperFamilySSF542774.32E-10621694No hitNo description
PfamPF023092.4E-7658705IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 717 aa     Download sequence    Send to blast
MAVVGEEGKA SGSRRMAAHH RKHMDDALPT KHKPAEAGGK NELYNELWRA CAGPLVYVPR  60
VGDIVYYFLQ GHMEQVEAYN SQDDKAELPI YNLPPKILCE VVYAQLKAEP GTDEVFAQIT  120
LLPRPEIDEL SLEVGNSPPL PPKLNVCSFS KKLTPSDTST HGGFSVPKRH ADECLPPLDM  180
SKDPPLQELV AKDLHGLEWR FRHIYRGQPK RHLLTSGWSV FVTSKKLVAG DVCIFLRGGD  240
GELRVGVRRA MKLQNNASTS VISSLSMQHG ILAGAFHAIS TGTRFTVYYH PWTRPAEFLV  300
PFSQYMKSAE IDYSIGTRFR MVFEGEECAD QRIAGTVVGT EDVDHIRWPA SEWRCLKVKW  360
DATTDSITRP ARVSPWNIEP IERTHKRPAS VQHQQKRLRP NDASSPWFSS LFSNGVFQGQ  420
ENRVTGVKAL GAAKTPLLPS LVRPPNPVWA QMQSGLENKL KFPMHDPFYM CLNRMVSLPG  480
GSLMSPGLSN HWPASPFAPY EVCETAAQSK NLSVPNASSE NSGSQMCMAL ELKDENRTPL  540
AQPNGGSRYM LFGVNLVNSP PELPSPQMAT SNELESPCSV PPTSQSSISE TIQVSEPSKS  600
VSGILSEKQC KNCYVSRSCT KVIKFGTALG RSVDLTRFHG YDELISELDQ MFDFNGSLID  660
GNSGFHIAYM DDEGDMMLVG DNPWQDFQCA VRRMFICPKE DIDGVIPSSP NPTPPQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-134303814355Auxin response factor 1
4ldw_A1e-134303814355Auxin response factor 1
4ldw_B1e-134303814355Auxin response factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024045602.10.0auxin response factor 2B
TrEMBLA0A067H8T00.0A0A067H8T0_CITSI; Auxin response factor
STRINGXP_006479861.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM157971016
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59750.41e-161auxin response factor 1