PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g005052m
Common NameCISIN_1g005058mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family TALE
Protein Properties Length: 717aa    MW: 80941 Da    PI: 6.8151
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g005052mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox26.98.2e-094815181954
                        HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
           Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                        Fe   ++yps  ++  LA+++gL+ +qV++WF N R +
  orange1.1g005052m 481 FEHflHPYPSDVDKHILARQTGLSRSQVSNWFINARVR 518
                        554459******************************88 PP
2BELL119.31.7e-38342413172
               BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                        e++elqk+k+kLls+leeVd+rY++y++q+++v+ssFeavag g+a++Y +lA+ka+SrhFrcL+d i++qi
  orange1.1g005052m 342 EFMELQKRKTKLLSMLEEVDRRYRHYCDQMKAVVSSFEAVAGNGAARVYSALASKAMSRHFRCLRDGIVGQI 413
                        679*******************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.1E-61280411IPR006563POX domain
PfamPF075266.5E-48286409IPR006563POX domain
PROSITE profilePS5007112.179459522IPR001356Homeobox domain
CDDcd000864.61E-11462523No hitNo description
SMARTSM003895.8E-9462526IPR001356Homeobox domain
SuperFamilySSF466896.84E-17463528IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-27465528IPR009057Homeodomain-like
PfamPF059209.8E-18479518IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0009506Cellular Componentplasmodesma
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 717 aa     Download sequence    Send to blast
MLAYLQKNSE ERFFFFFFFF LFFFCFVFNI TDKIHSLLLL RNWWFCYSDV SSSNPTLHQT  60
HMMNQIQGFE GNHEIFNLTT GMEMIGFSKN LQQHTSDNNS VMWKEFFNNK PAGNNPGPSS  120
SKTINESTTS DHHFYQHDHQ FNKQDFTTGM SETSGENLIV GHDHSDVAGA WQENNSRLLV  180
DDSSLRCVFP CEGNERPSQG LSLSLSSSNP SSIGLQSFEL RQTNHNDHDH QQDDMRFISS  240
STSREGFFGK PAAGIQQQQQ MMQDGFLGKP AIPPNIHHQT GHQFQLRNSK YLAPAQEILK  300
EFCSLGTKQN DATKLKSNKA KQQWDDENAG SSSRKQSLCS LEFMELQKRK TKLLSMLEEV  360
DRRYRHYCDQ MKAVVSSFEA VAGNGAARVY SALASKAMSR HFRCLRDGIV GQIQATKKAM  420
GEKDPVAPGT SRGETPRLKI IDQTLRQQRA FQQMSMMESH PWRPQRGLPE RSVSVLRAWL  480
FEHFLHPYPS DVDKHILARQ TGLSRSQVSN WFINARVRLW KPMVEEMYLE ETKEQDNNMA  540
SSDGATDLDD NSGRPNQTQN PPADQKPTQD QLVRIDSECL SSIINNHDKN DANKNPNKAL  600
PSHHMQQNFG SFGAMELDFS SYNQHTVGGV SYANDSANHQ NFNGGSGGVS LTLGLQQHGG  660
SGVSLAFSPA SQSSLFYPRD HIEDCQQVQY SLLDGEGQNL PYRNLMGAQL LHDLAG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A3e-15468526563Homeobox protein Meis2
3k2a_B3e-15468526563Homeobox protein Meis2
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.81690.0flower| leaf
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Early expression is detected in the inflorescence apex of developing flowers and also in the ovule primordium and the integuments. {ECO:0000269|PubMed:8521490}.
UniprotTISSUE SPECIFICITY: Expressed in both floral and vegetative tissues. {ECO:0000269|PubMed:8521490}.
Functional Description ? help Back to Top
Source Description
UniProtPlays a major role in ovule patterning and in determination of integument identity via its interaction with MADS-box factors. Formation of complex with AG-SEP dimers negatively regulates the carpel identity process and favors the maintenance of ovule identity. BEL1-STM complex maintains the indeterminacy of the inflorescence meristem. Required, with SPL, for cytokinin-induced PIN1 expression in ovules (PubMed:22786869). {ECO:0000269|PubMed:12244239, ECO:0000269|PubMed:17693535, ECO:0000269|PubMed:22786869}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006439494.10.0homeobox protein BEL1 homolog isoform X1
SwissprotQ388971e-145BEL1_ARATH; Homeobox protein BEL1 homolog
TrEMBLA0A067G9F80.0A0A067G9F8_CITSI; Uncharacterized protein
STRINGXP_006439494.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM58662639
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41410.11e-136TALE family protein
Publications ? help Back to Top
  1. Yamada T,Sasaki Y,Hashimoto K,Nakajima K,Gasser CS
    CORONA, PHABULOSA and PHAVOLUTA collaborate with BELL1 to confine WUSCHEL expression to the nucellus in Arabidopsis ovules.
    Development, 2016. 143(3): p. 422-6
    [PMID:26700684]
  2. Lozano-Sotomayor P, et al.
    Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana.
    Plant J., 2016. 88(3): p. 437-451
    [PMID:27402171]