PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g005019m | ||||||||
Common Name | CISIN_1g004499mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | bHLH | ||||||||
Protein Properties | Length: 720aa MW: 79220.5 Da PI: 6.2091 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 11.4 | 0.0006 | 551 | 588 | 13 | 55 |
HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 R+ i +++ eLrel+P+ + K s + Le++++++ Lq orange1.1g005019m 551 RQLIQDRIKELRELVPNgS------KCSIDSLLERTIKHMLFLQ 588 77899************55......7777778999999988887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 1.6E-36 | 11 | 171 | IPR025610 | Transcription factor MYC/MYB N-terminal |
SuperFamily | SSF47459 | 4.06E-5 | 536 | 593 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 11.115 | 538 | 587 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 7.0E-4 | 549 | 594 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 0.00325 | 551 | 588 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 720 aa Download sequence Send to blast |
MGASSTTFDL HGILKSLCFN TAWKYAVFWK LKHRTRMVLT WEDGYYDNCG QQDSLENKCS 60 SESLENFHGG RYSHDPLGLA VAKMSYHVYS LGEGIVGQVA VTGKHQWIFS DQLVTNSCSS 120 FEFSDGWQSQ FSAGIRTIAV VAVVPHGVVQ LGSLDEVTED MKVVTHIRDV FAALNDISVG 180 HVSSTIQSSV KNTLSLPDLP TKTIPNRWHN LDEVVNRGGP DVQLPMFPYV EKHNDGSYAF 240 SGMQPKIGDG VVNRNEGILL SSAGGVGSAK ILHPKSNVIN LDYQNQMGIH FISDGMSRVE 300 SSGWKDLGVI SEQNGTPFSI NSVIDSINLC SVALQAEKFV ADRTYLASNP LEAVLGEQVK 360 LECTDSCQNG MLHIPEISDI KFEKDLEKLQ NQTELNHLDP SGMSLKFSAV SELHEALGPA 420 FLRKDIYNDR EPENTVDGET VGMPELTSSS HLMFDSGSEN LLDAVVASVC NSGSDVKSER 480 TFCRSMQSLL TTEKKPESSS QKVCGAVSSK GFSSTCPSTC SEQLDRSSEP AKNNKKRART 540 GENGRPRPRD RQLIQDRIKE LRELVPNGSK CSIDSLLERT IKHMLFLQSI TKHADKLSKC 600 AESKMHQKGN GIHGSNYEQG SSWAVEMGSH LKVCSIVVEN LNKNGQMLVE MLCEECSHFL 660 EIAEAIRSLG LTILKGVTEA HGDKTWICFV VEGQDNRIMH RMDVLWSLVQ LLQSKTTSS* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024044170.1 | 0.0 | transcription factor EMB1444 isoform X2 | ||||
TrEMBL | A0A067FM25 | 0.0 | A0A067FM25_CITSI; Uncharacterized protein | ||||
STRING | XP_006443866.1 | 0.0 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31280.1 | 1e-180 | conserved peptide upstream open reading frame 7 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g005019m |