PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g004896m | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | ARF | ||||||||
Protein Properties | Length: 725aa MW: 79705.8 Da PI: 7.5441 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 73.6 | 2.3e-23 | 113 | 214 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 f k+lt+sd+++ g +++p+ +ae++ ++ + t++ +d +g+ W++++iyr++++r++lt+GW+ Fv++++L +gD++vF + orange1.1g004896m 113 FAKTLTQSDANNGGGFSVPRYCAETIfprldytADPPVQ--TVVAKDVHGEIWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFLR- 201 89****************************997556555..8************************************************4. PP SSSEE..EEEEE-S CS B3 86 grsefelvvkvfrk 99 +++ l+v+++r+ orange1.1g004896m 202 -AQDGDLCVGIRRA 214 .378888****996 PP | |||||||
2 | Auxin_resp | 111.6 | 7.8e-37 | 291 | 374 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 a+ a+++++FevvY+Prast+eF+vk++ v++a++v++ GmRfkmafetedss++++ +Gt+++v+ +dp++WpnS+Wr+L+ orange1.1g004896m 291 AVALAASGKPFEVVYYPRASTPEFCVKASAVKAAMRVHWLCGMRFKMAFETEDSSRISWfMGTISSVQVADPISWPNSPWRLLQ 374 5678999***************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 5.0E-37 | 105 | 216 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.07E-28 | 107 | 216 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.14E-20 | 112 | 213 | No hit | No description |
PROSITE profile | PS50863 | 12.844 | 113 | 215 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 7.7E-22 | 113 | 215 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.5E-21 | 113 | 214 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.7E-32 | 291 | 374 | IPR010525 | Auxin response factor |
PROSITE profile | PS51745 | 17.361 | 612 | 692 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007389 | Biological Process | pattern specification process | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0009738 | Biological Process | abscisic acid-activated signaling pathway | ||||
GO:0009743 | Biological Process | response to carbohydrate | ||||
GO:0010154 | Biological Process | fruit development | ||||
GO:0031540 | Biological Process | regulation of anthocyanin biosynthetic process | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0048441 | Biological Process | petal development | ||||
GO:0048442 | Biological Process | sepal development | ||||
GO:0048589 | Biological Process | developmental growth | ||||
GO:0048829 | Biological Process | root cap development | ||||
GO:0051301 | Biological Process | cell division | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 725 aa Download sequence Send to blast |
MKEVEKSIDP QLWHACAGSM VQIPPLNSTV FYFPQGHAEH SLGSVNFPSS SRIPPLIFCR 60 VSSLKFLADS ETDEVYAKIK LVPIPANEID FEDNNLSLNS VGSDSESEKP ASFAKTLTQS 120 DANNGGGFSV PRYCAETIFP RLDYTADPPV QTVVAKDVHG EIWKFRHIYR GTPRRHLLTT 180 GWSTFVNQKK LVAGDSIVFL RAQDGDLCVG IRRAKKGIGG GNEYPSSGWN SNNGSCVTGN 240 PFGGFSCFLR EEENKMARNG NMNLNSYGSF NSSGNTRGNG GRVKPEMVLE AVALAASGKP 300 FEVVYYPRAS TPEFCVKASA VKAAMRVHWL CGMRFKMAFE TEDSSRISWF MGTISSVQVA 360 DPISWPNSPW RLLQVTWDEP DLLQNVKRVS PWLVELVSNM PVIHLSPFSP ARKKLRLPQQ 420 LDFPFDGQFT MPLFSGNPLG PSSPLCCLSD NTSAGIQGAR HAQFGISSSD FHVNNKLQSG 480 LFLSSLQRFT PNSRDFDGIL TSHTNSSENL SCLLTMGNSN QNLEKSENIK KHQFLLFGQP 540 IRTEQQISHS CSDDVVSQVL GKSSSDGHSD KVKASSDGSG STHEQRISIE KSSSSEFFWN 600 RSFQVTESGL DTGHCKVFLE SEDVGRTLDL SVLSSYEELY RRLAIMFGIE RSDMLSHVLY 660 QDASGAIKRT GDEPFSDFMK SAKRLTILMG SGSDSVGRTW ITGMRTPKNG LDASNKTGLM 720 RQAA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 3e-70 | 8 | 395 | 51 | 388 | Auxin response factor 5 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Csi.695 | 0.0 | callus| fruit |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006488079.1 | 0.0 | auxin response factor 10 | ||||
Refseq | XP_024957943.1 | 0.0 | auxin response factor 10 | ||||
Swissprot | Q653H7 | 0.0 | ARFR_ORYSJ; Auxin response factor 18 | ||||
TrEMBL | V4SBC2 | 0.0 | V4SBC2_9ROSI; Auxin response factor | ||||
STRING | XP_006488079.1 | 0.0 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM580 | 27 | 130 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28350.1 | 0.0 | auxin response factor 10 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g004896m |
Publications ? help Back to Top | |||
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