PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g004544m | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 746aa MW: 81459.6 Da PI: 6.4068 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.1 | 3e-18 | 29 | 87 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le+++ ++++ps +r++L +++ +++ +q+kvWFqNrR +ek+ orange1.1g004544m 29 KYVRYTAEQVEALERVYSECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 87 5679*****************************************************97 PP | |||||||
2 | START | 154.4 | 9.1e-49 | 167 | 368 | 2 | 198 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEE CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..gal 91 +aee+++e+++ka+ ++ Wv+++ +++g++++ +f+ s+++sg a+ra+g+v +++ +e+l+d++ W +++++ e+ g g++ orange1.1g004544m 167 IAEETLAEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISQSCSGVAARACGLVSLEPT-KIAEILKDRPSWFRDCRSLEVFTMFPAGnaGTI 257 7899******************************************************.7777777777*****************99**** PP EEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHH CS START 92 qlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphw 179 +l +++ +a+++l+p Rdf+++Ry+ +l g++v++++S++ p+ +++vRae+lpSg+li+p+++g+s +++v+h +l+++++++ orange1.1g004544m 258 ELLYTQAYAPTTLAPaRDFWTLRYTTTLDNGSLVVCERSLSGSGAGPNpasAAQFVRAEMLPSGCLIRPCDGGGSIIHIVDHLNLEAWSVPE 349 *****************************************988888878999*************************************** PP HHHHHHHHHHHHHHHHHHH CS START 180 llrslvksglaegaktwva 198 +lr+l++s+ + +++++ a orange1.1g004544m 350 VLRPLYESSKVVAQRMTIA 368 ***********99998765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.2E-18 | 6 | 87 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 15.418 | 24 | 88 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.9E-14 | 26 | 92 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 3.04E-16 | 27 | 91 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.01E-15 | 29 | 89 | No hit | No description |
Pfam | PF00046 | 9.0E-16 | 30 | 87 | IPR001356 | Homeobox domain |
CDD | cd14686 | 1.52E-6 | 81 | 120 | No hit | No description |
PROSITE profile | PS50848 | 25.241 | 157 | 358 | IPR002913 | START domain |
CDD | cd08875 | 1.38E-68 | 161 | 366 | No hit | No description |
Gene3D | G3DSA:3.30.530.20 | 1.2E-18 | 166 | 349 | IPR023393 | START-like domain |
SMART | SM00234 | 1.5E-36 | 166 | 377 | IPR002913 | START domain |
SuperFamily | SSF55961 | 1.51E-31 | 166 | 356 | No hit | No description |
Pfam | PF01852 | 4.0E-46 | 167 | 368 | IPR002913 | START domain |
Pfam | PF08670 | 3.7E-10 | 692 | 737 | IPR013978 | MEKHLA |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009855 | Biological Process | determination of bilateral symmetry | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:0009956 | Biological Process | radial pattern formation | ||||
GO:0010014 | Biological Process | meristem initiation | ||||
GO:0010051 | Biological Process | xylem and phloem pattern formation | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0008289 | Molecular Function | lipid binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 746 aa Download sequence Send to blast |
MAMVIQQQQQ QQRESSSGSI NKHQLDNGKY VRYTAEQVEA LERVYSECPK PSSLRRQQLI 60 RECPILSNIE PKQIKVWFQN RRCREKQRKE ASRLQTVNRK LTAMNKLLME ENDRLQKQVS 120 QLVCENGYMK QQLRTAPATT DASCDSVVTT PQHSLRDANN PAGLLSIAEE TLAEFLSKAT 180 GTAVDWVQMP GMKPGPDSVG IFAISQSCSG VAARACGLVS LEPTKIAEIL KDRPSWFRDC 240 RSLEVFTMFP AGNAGTIELL YTQAYAPTTL APARDFWTLR YTTTLDNGSL VVCERSLSGS 300 GAGPNPASAA QFVRAEMLPS GCLIRPCDGG GSIIHIVDHL NLEAWSVPEV LRPLYESSKV 360 VAQRMTIAET SGEVVYGLGR QPAVLRTFSQ RLSRGFNDAV NGFNDDGWSL MTCDGAEDVI 420 IAVNSTKSLS TASNPTNSLA FLGGILCAKA SMLLQNVPPA LLVRFLREHR SEWADFNVDA 480 YSAASLKAGS YAYPGMRPTR FTGSQIIMPL GHTIEHEELL EVIRLEGHSL AQEDAFVSRD 540 IHLLQICSGV DENAVGACSE LVFAPIDEMF PDDGPLLPSG FRIIPLDSKT PDTPDTLTAH 600 RTLDLTSSLE VGPATNPAAG DSSSCHHTRS VLTIAFQFPF ESNLQDNVAT MARQYVRSVI 660 SSVQRVAMAI CPSGLSPTLG PKLSPGSPEA LTLAHWICQS YSYHLGAELL RSDSVGGDSV 720 LKNLWQHSDA ILCCSLKVPL QFHQR* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Csi.12063 | 1e-101 | callus |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed at the earliest stages and throughout LSM initiation and development. In embryo development, expressed at the heart stage until the 'walking stick' stage in the adaxial portion of the cotyledon primordia, the shoot apical meristem (SAM) and the vascular precursor cells of the hypocotyl and root. In developing flowers, expressed first at stage 1 in the center of L3 layer and then expands to the center of L2 and L1 layers. Expressed in the center of flower meristem through stages 4 and 5. At stage 6, expressed in the adaxial side of the carpel primordia and then on the adaxial carpel face. {ECO:0000269|PubMed:11169198}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the interfascicular regions of stem and vascular bundles of young roots and leaves. {ECO:0000269|PubMed:10559440}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the regulation of interfascicular fiber (cortical cells) and secondary xylem differentiation in the inflorescence stems. Required for lateral shoot meristems (LSMs) and flower meristems (FMs) initiation. May be involved in the determination of vascular patterning and organ polarity (PubMed:10559440, PubMed:11169198, PubMed:11402186, PubMed:15111711, PubMed:15598805, PubMed:7555701). Directly regulates the expression of AGO10, ZPR1, ZPR2, ZPR3 and ZPR4 (PubMed:22781836). Required to regulate adaxial-abaxial polarity and leaf axial patterning (PubMed:20807212). {ECO:0000269|PubMed:10559440, ECO:0000269|PubMed:11169198, ECO:0000269|PubMed:11402186, ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:20807212, ECO:0000269|PubMed:22781836, ECO:0000269|PubMed:7555701}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. Repressed by ZPR and miR165. Induced by DOF5.1 (PubMed:20807212). {ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:17237362, ECO:0000269|PubMed:20807212}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006488084.1 | 0.0 | homeobox-leucine zipper protein REVOLUTA | ||||
Swissprot | Q9SE43 | 0.0 | REV_ARATH; Homeobox-leucine zipper protein REVOLUTA | ||||
TrEMBL | A0A2H5NDV0 | 0.0 | A0A2H5NDV0_CITUN; Uncharacterized protein | ||||
STRING | XP_006488084.1 | 0.0 | (Citrus sinensis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60690.1 | 0.0 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g004544m |