PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g004499m
Common NameCISIN_1g004499mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 749aa    MW: 82376.8 Da    PI: 6.048
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g004499mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.30.000635806171355
                        HHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                HLH  13 RdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                        R+ i +++ eLrel+P+ +      K s  + Le++++++  Lq
  orange1.1g004499m 580 RQLIQDRIKELRELVPNgS------KCSIDSLLERTIKHMLFLQ 617
                        77899************55......7777778999999988887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.8E-3611171IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474594.32E-5565622IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.115567616IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.4E-4578623IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000830.0034580617No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 749 aa     Download sequence    Send to blast
MGASSTTFDL HGILKSLCFN TAWKYAVFWK LKHRTRMVLT WEDGYYDNCG QQDSLENKCS  60
SESLENFHGG RYSHDPLGLA VAKMSYHVYS LGEGIVGQVA VTGKHQWIFS DQLVTNSCSS  120
FEFSDGWQSQ FSAGIRTIAV VAVVPHGVVQ LGSLDEVTED MKVVTHIRDV FAALNDISVG  180
HVSSTIQSSV KNTLSLPDLP TKTIPNRWHN LDEVVNRGGP DVQLPMFPYV EKHNDGSYAF  240
SGMQPKIGDG VVNRNEGILL SSAGGVGSAK ILHPKSNVIN LDYQNQMGIH FISDGMSRVE  300
SSGWKDLGVI SEQNGTPFSI NSVIDSINLC SVALQAEKFV ADRTYLASNP LEAVLGEQVK  360
LECTDSCQNG MLHIPEISDI KFEKDLEKLQ NQTELNHLDP SGMSLKFSAV SELHEALGPA  420
FLRKDIYNDR EPENTVDGET VGMPELTSSS HLMFDSGSEN LLDAVVASVC NSGSDVKSER  480
TFCRSMQSLL TTEKKPESSS QSKNTNNSVS YSISQSSLVE EDAKHFLNSS EVCGAVSSKG  540
FSSTCPSTCS EQLDRSSEPA KNNKKRARTG ENGRPRPRDR QLIQDRIKEL RELVPNGSKC  600
SIDSLLERTI KHMLFLQSIT KHADKLSKCA ESKMHQKGNG IHGSNYEQGS SWAVEMGSHL  660
KVCSIVVENL NKNGQMLVEM LCEECSHFLE IAEAIRSLGL TILKGVTEAH GDKTWICFVV  720
EGQDNRIMHR MDVLWSLVQL LQSKTTSS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006443866.10.0transcription factor bHLH155 isoform X1
RefseqXP_015386328.10.0transcription factor bHLH155 isoform X1
TrEMBLA0A067FM700.0A0A067FM70_CITSI; Uncharacterized protein
STRINGXP_006443866.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20832030
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31280.10.0conserved peptide upstream open reading frame 7