PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g004489m | ||||||||
Common Name | CISIN_1g004106mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | ARF | ||||||||
Protein Properties | Length: 750aa MW: 80997.7 Da PI: 6.9486 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 78 | 1e-24 | 161 | 262 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 f+k+lt sd++++g +++p++ ae++ + +++ s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv+ ++L +gD v+F + orange1.1g004489m 161 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyS-QQRPSQELVAKDLHGLEWRFRHIYRGQPRRHLLTTGWSAFVNKKKLVSGDAVLFL--R 249 99****************************963.3445679************************************************..4 PP SSEE..EEEEE-S CS B3 87 rsefelvvkvfrk 99 +++el+++++r+ orange1.1g004489m 250 GEDGELRLGIRRA 262 49999*****997 PP | |||||||
2 | Auxin_resp | 118.9 | 4e-39 | 287 | 368 | 1 | 82 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 +++a++ k +F++ YnPras+seF+++v+k++k+l+++++vGmRfkm+fet+d++err++G+++gv d+dpvrWp+SkWr+L orange1.1g004489m 287 VVDAIARKRAFSISYNPRASASEFIIPVNKFLKSLDHSFAVGMRFKMRFETDDAAERRYTGVIMGVGDVDPVRWPGSKWRCL 368 578999***************************************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.4E-40 | 153 | 263 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.58E-43 | 153 | 274 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.45E-22 | 159 | 261 | No hit | No description |
SMART | SM01019 | 1.7E-23 | 161 | 263 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 8.9E-23 | 161 | 262 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.408 | 161 | 263 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 2.8E-34 | 288 | 368 | IPR010525 | Auxin response factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0010050 | Biological Process | vegetative phase change | ||||
GO:0010158 | Biological Process | abaxial cell fate specification | ||||
GO:0010582 | Biological Process | floral meristem determinacy | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 750 aa Download sequence Send to blast |
MVGLIDLNTT EDDENPSSGS LSPSSSSASA LSASGFALAP APASASASAS GVSLELWHAC 60 AGPLISLPKR GSVVVYFPQG HLEHVSDFSA AASAAYDLPP HPFCRVADVK LHAEAASDEV 120 YAQVSLVPDE LIEQKVREGK IEDGDEDSVE VVAKSSTPHM FCKTLTASDT STHGGFSVPR 180 RAAEDCFPPL DYSQQRPSQE LVAKDLHGLE WRFRHIYRGQ PRRHLLTTGW SAFVNKKKLV 240 SGDAVLFLRG EDGELRLGIR RAPHVKSGAT FPSFCSQQSS PNSVTEVVDA IARKRAFSIS 300 YNPRASASEF IIPVNKFLKS LDHSFAVGMR FKMRFETDDA AERRYTGVIM GVGDVDPVRW 360 PGSKWRCLLV RWDDVESNRH TRVSPWEIEP SGSVCGSNNL ITSGLKRTRI GLPSGKPEFP 420 VPDGIGVTDF GESLRFQKVL QGQEILGFNT LYDGGDCQNL HPSEVRRGIL GSNGSGIAAI 480 GDGSRNLQVK SDISYKGIGI GFGESFRFHK VLQGQEIFPK SPYGRAPTNN EARGIGSLGI 540 SDGVLVSGSR NRWSAVVPGY NTHTSPSAPP VQVSSPSSVL MFQLASNPIS NYNPPYSLND 600 QEKEQRVNCQ SFFHNSEIYG GKHASSSFLD HSFRGGDQEV MDSIGQSNEH ISPPLVGQPT 660 VRGSQDLVSS CKGSCRLFGF SLTEERHVAN IEDNAAPVAS PLNPRSSFLS HVGQQFHPKP 720 PVMSKATGSN CTNVSNHCAV RDMLFDIAL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldv_A | 1e-108 | 55 | 397 | 22 | 361 | Auxin response factor 1 |
4ldw_A | 1e-108 | 55 | 397 | 22 | 361 | Auxin response factor 1 |
4ldw_B | 1e-108 | 55 | 397 | 22 | 361 | Auxin response factor 1 |
4ldy_A | 1e-108 | 55 | 397 | 22 | 361 | Auxin response factor 1 |
4ldy_B | 1e-108 | 55 | 397 | 22 | 361 | Auxin response factor 1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Detected during gynoecium development. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the whole plant. {ECO:0000269|PubMed:10476078, ECO:0000269|PubMed:9409666}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Involved in the establishment or elaboration of tissue patterning during gynoecial development. {ECO:0000269|PubMed:10952886, ECO:0000269|PubMed:12036261}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00021 | PBM | Transfer from AT2G33860 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by AHL21/GIK. {ECO:0000269|PubMed:19956801}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024951046.1 | 0.0 | auxin response factor 3-like isoform X1 | ||||
Swissprot | O23661 | 0.0 | ARFC_ARATH; Auxin response factor 3 | ||||
TrEMBL | A0A067GGF1 | 0.0 | A0A067GGF1_CITSI; Auxin response factor | ||||
STRING | XP_006467718.1 | 0.0 | (Citrus sinensis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33860.1 | 0.0 | ARF family protein |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g004489m |