PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g004454m
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family HB-other
Protein Properties Length: 754aa    MW: 86000.9 Da    PI: 9.3016
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g004454mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.46e-192278157
                       TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
           Homeobox  1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                       + kR   t++qle+Le+ ++ ++yps++ r+eL+++lgL++rq ++WF+ rR k++k
  orange1.1g004454m 22 KTKRKMKTASQLEILEKTYAVESYPSEALRAELSAQLGLSDRQLQMWFCHRRLKDRK 78
                       6799***************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-17478IPR009057Homeodomain-like
PROSITE profilePS5007116.521979IPR001356Homeobox domain
SuperFamilySSF466899.84E-162078IPR009057Homeodomain-like
SMARTSM003897.4E-162183IPR001356Homeobox domain
PfamPF000461.2E-162278IPR001356Homeobox domain
CDDcd000868.45E-142278No hitNo description
PROSITE profilePS5082717.347538597IPR018501DDT domain
SMARTSM005712.7E-22538597IPR018501DDT domain
PfamPF027919.4E-17540594IPR018501DDT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 754 aa     Download sequence    Send to blast
MEAASEAEEK KKKKKPLEAE VKTKRKMKTA SQLEILEKTY AVESYPSEAL RAELSAQLGL  60
SDRQLQMWFC HRRLKDRKAP TAKRQPKDFQ SLVPAGEKEL AGSELVRGGM AVQRYYAVPM  120
APMLPFPLPQ RNIVEMRVIA FVESQLGEPL REDGPILGVE FDSLPPDAFG RPIGPAAMGH  180
QKHSVRPLEA KEYERLDVKP FKDMFTIHPQ GATRTVHEYK FLPEQPTVRS ETHEKAASSY  240
PYGSPADGST ARNSSLRAGH PFMHGSEQIS SGYGFPGQLP NLNLLSHQGR HSHLLPSVSG  300
EYENILRKNS FISAAMDAHV GGQPITAMDN AFISSDRRVS HDEDVSRTEK KRKSEEARIA  360
REVEAHEKRI RKELEKQDIL RRKREEQIRK EMERQDRERR KEEERLLREK LREEERYLRE  420
QRRELERREK FLQKESIRAE KRRQKEELRR VKEAERLKVA NERAVARRIA KESMALVEDE  480
RLELMELAAS SKGLPTIVSL DFETLQNLDL FRDRPCTFPP KSVQLKRPFA VQPWNDSEDN  540
IGNLLMVWRF LITFADVLGL WPFTLDEFVQ AFHDYDPRLL GEIHVTLLRS VIKDIEDAAK  600
TPFTGLGANQ NSAVNPGGAH PQIVEGAYAW GFDIRSWQLH LNALTWPEIL RQFALSAGFG  660
PQLNKRNIEK MYPHDNNEGN DGENIISNLR NGSAVGNAVA IMHEMGLSNL RRSRHRLTPG  720
TVKFAAFHVL SLEGSEGLTI LEVADKIQVT LEL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1815EKKKKKKP
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed in growing tissues such as inflorescence and flower meristems, young leaves and floral organs. Expressed in roots, rosette and cauline leaves, stems, flowers, inflorescences and siliques. {ECO:0000269|PubMed:22694359}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC (PubMed:22694359). Involved in the transcriptional regulation of seed-specific gene expression (PubMed:23872538). {ECO:0000269|PubMed:22694359, ECO:0000269|PubMed:23872538}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006470166.10.0homeobox-DDT domain protein RLT2-like isoform X2
SwissprotQ9FFH10.0RLT2_ARATH; Homeobox-DDT domain protein RLT2
TrEMBLA0A2H5PTA70.0A0A2H5PTA7_CITUN; Uncharacterized protein
STRINGXP_006470165.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96012530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44180.20.0Homeodomain-like transcriptional regulator