PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | orange1.1g004450m | ||||||||
Common Name | CISIN_1g004450mg, LOC102611961 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
|
||||||||
Family | FAR1 | ||||||||
Protein Properties | Length: 754aa MW: 86079.2 Da PI: 7.3708 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 98.3 | 8.1e-31 | 71 | 158 | 2 | 91 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn+YA+++GFs+r+s ++s+r+g+i++r+ vCs+eg+r+ ++++ +++r+r+ tr+gCka+++vkk+ +gkw v+kl +eHnHel+p orange1.1g004450m 71 FYNSYARRIGFSTRVSVYQRSRRDGSIICRQIVCSREGFRRGSSEN--RSKRQRTITRVGCKAQMTVKKQGSGKWAVSKLIKEHNHELVP 158 9*****************************************9988..999*************************************86 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 8.8E-28 | 71 | 158 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 1.1E-29 | 279 | 369 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 10.769 | 563 | 595 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 1.2E-9 | 568 | 593 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 3.6E-8 | 570 | 597 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 754 aa Download sequence Send to blast |
MEFEPLDIEN GVIEFDEMRN SNGEDDSERP SDYYDHVLPD NSRNFETLNG DPNLEPFEGM 60 EFDSEQAARI FYNSYARRIG FSTRVSVYQR SRRDGSIICR QIVCSREGFR RGSSENRSKR 120 QRTITRVGCK AQMTVKKQGS GKWAVSKLIK EHNHELVPPD KVHCLRSHRH VSGPARSLID 180 TLQAAGMGPS GVMSVLIKES GGVNNVGFTK VDCQNYMSSS RQRTLGSGGQ VVIDNLKQMQ 240 AEDPSFFCAF QGDFENTTGN IFWADANSRM NYSYFGDTVT FDTTYRMNRY RIPFAPFTGL 300 NHHGQPVLFG CALLLNESEA SFIWLFEAWL AAMSGRSPNS ITTDQDRIIR AAVAQVFPGT 360 RHRFCKWNVF REAQERLSDV YQSHPHFEAE FQRCINMTET VDEFESCWES LIRRYNLVGN 420 EWLQSMYNVR QQWVPVYLRD TFFGEMSMTQ ASDNINSYFD GYINASTNIQ ALIKQYEKAI 480 ASRHEKEVKA DYDTVNTEPV LKTPSPMEKQ VANLYTRKIF MKFQEELVET LAYPATIVND 540 TGSEIIYRVA KFGEEQKAHF VRYNIFEKKA SCSCQLFEFS GIICRHILAV FRVTNILTLP 600 SHYILKRWTR NAKSGVLLNG HVLGLASSRQ ESSAARYDNL CREVIKYVEE GAESAHIYNM 660 AMDVLREAAK KVAAAKKYGP GVTQNSLFSG CQQHHSCSVD QDKKIQELTV ELENASQRCE 720 AYRTKLLAVL KDMEEEKTKM LVKVENVRLD LKG* |
Expression -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269|PubMed:15591448}. |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006435469.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5 | ||||
Refseq | XP_006473867.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5 | ||||
Swissprot | Q9SZL8 | 0.0 | FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5 | ||||
TrEMBL | A0A067GZX0 | 0.0 | A0A067GZX0_CITSI; Uncharacterized protein | ||||
TrEMBL | V4V971 | 0.0 | V4V971_9ROSI; Uncharacterized protein | ||||
STRING | XP_006473867.1 | 0.0 | (Citrus sinensis) | ||||
STRING | XP_006435469.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM118 | 26 | 253 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G38180.1 | 0.0 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
---|---|
Phytozome | orange1.1g004450m |
Entrez Gene | 102611961 |
Publications ? help Back to Top | |||
---|---|---|---|
|