PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g004271m
Common NameCISIN_1g004271mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family HD-ZIP
Protein Properties Length: 765aa    MW: 84061.8 Da    PI: 6.3198
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g004271mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox66.92.7e-21110165156
                        TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
           Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                        r+k +++t+eq++e+e+lF+++++p++++r++L+k+lgL  rqVk+WFqNrR++ k
  orange1.1g004271m 110 RKKYHRHTAEQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIK 165
                        7999************************************************9987 PP
2START217.83.7e-682835035206
                        HHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS.......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEE CS
              START   5 eaaqelvkkalaeepgWvkss....esengdevlqkfeeskv......dsgealrasgvvdmvlallveellddkeqWdetla....kaetl 82 
                        + ++el k+a+a+ p+W +s     e++n+de++++f+ +++      +s+ea+r+ gvv+ +l++lv+++ d++ qW+ +++    ka+t+
  orange1.1g004271m 283 QGMEELKKMATAGGPLWIRSLetgrEILNYDEYVKEFSAENSsngksnRSIEASRDAGVVFVDLPKLVQSFTDVN-QWKAMFPclisKAATV 373
                        568999*******************************998889********************************.**************** PP

                        EEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEE CS
              START  83 evissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwv 167
                        +vi+ g      ga+qlm+aelq+l+p+vp R+++fvRy++ql+a++w+ivdvS+d  +++  ++s+++++++pSg+++e+ksngh+kvtwv
  orange1.1g004271m 374 DVICGGegpnrnGAVQLMFAELQMLTPMVPtREVYFVRYCKQLSAEQWAIVDVSIDKVEENI-DASLAKCRKRPSGCIVEDKSNGHCKVTWV 464
                        ************************************************************98.9**************************** PP

                        E-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
              START 168 ehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                        eh ++++ ++h ++rs+v+sgla+ga++w+ tlq qce+
  orange1.1g004271m 465 EHLECQKGTVHTMYRSIVSSGLAFGARHWMTTLQLQCER 503
                        *************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.5E-2490165IPR009057Homeodomain-like
SuperFamilySSF466893.13E-2197168IPR009057Homeodomain-like
PROSITE profilePS5007118.285107167IPR001356Homeobox domain
SMARTSM003894.0E-19109171IPR001356Homeobox domain
PfamPF000461.3E-18110165IPR001356Homeobox domain
CDDcd000865.57E-17114165No hitNo description
PROSITE patternPS000270142165IPR017970Homeobox, conserved site
PROSITE profilePS5084836.389270506IPR002913START domain
SuperFamilySSF559613.75E-29272503No hitNo description
CDDcd088754.56E-108274502No hitNo description
SMARTSM002341.8E-70279503IPR002913START domain
PfamPF018521.7E-53283503IPR002913START domain
Gene3DG3DSA:3.30.530.205.6E-4339486IPR023393START-like domain
SuperFamilySSF559611.74E-13533749No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009957Biological Processepidermal cell fate specification
GO:0010062Biological Processnegative regulation of trichoblast fate specification
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 765 aa     Download sequence    Send to blast
MGVVDMSNNP PTSRTKDFFA SPALSLSLAG IFRGAGASAA ANNEVEEGYE GSGGAGGGSK  60
REETTVEISS ENSGHTRSRS DADFDGGGDG DDDDGDGDGD DDSKNKKKKR KKYHRHTAEQ  120
IREMEALFKE SPHPDEKQRQ QLSKQLGLAP RQVKFWFQNR RTQIKTIQER HENSLLKSEI  180
EKLREENKAM REAINKACCP NCGMATTSRD TSMTTEEQQL RIENARLKAE VEKLRAAVGK  240
CPPGATSTSS CSAGNDQENR SSLDFYTGIF GIDKSRIMEL VNQGMEELKK MATAGGPLWI  300
RSLETGREIL NYDEYVKEFS AENSSNGKSN RSIEASRDAG VVFVDLPKLV QSFTDVNQWK  360
AMFPCLISKA ATVDVICGGE GPNRNGAVQL MFAELQMLTP MVPTREVYFV RYCKQLSAEQ  420
WAIVDVSIDK VEENIDASLA KCRKRPSGCI VEDKSNGHCK VTWVEHLECQ KGTVHTMYRS  480
IVSSGLAFGA RHWMTTLQLQ CERLVFFMAT NVPTKDSSGV ATLAGRKSIL KLAQRMTWSF  540
CRAIGASSYH VWNKVTSKTG EDIRVSSRKN LNDPGEPLGV ILCAVSSVWL PVSPNVLFDF  600
LRDEAHRNEW DIMSNGGPVQ TIANLAKGQD RGNAVNIQTM KSKENSMWLL QDSYTNAYES  660
MVVYAPVDIT GMQSVITGCD SSNIAILPSG FSILPDGLES RPLVITSRQE EKITEGGSLL  720
SIAFQILTNN SPAAKLTMES VDSVNTLISC TLRNIKTSLQ CEDA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1105110KKKKRK
2105111KKKKRKK
3107111KKRKK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in developing trichomes.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required for correct morphological development and maturation of trichomes as well as for normal development of seed coat mucilage. Regulates the frequency of trichome initiation and determines trichome spacing. {ECO:0000269|PubMed:11844112}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by GEM. {ECO:0000269|PubMed:17450124}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006465622.10.0homeobox-leucine zipper protein GLABRA 2
SwissprotP466070.0HGL2_ARATH; Homeobox-leucine zipper protein GLABRA 2
TrEMBLA0A067EP760.0A0A067EP76_CITSI; Uncharacterized protein
STRINGXP_006465622.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM123702731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79840.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Wu R,Citovsky V
    Adaptor proteins GIR1 and GIR2. I. Interaction with the repressor GLABRA2 and regulation of root hair development.
    Biochem. Biophys. Res. Commun., 2017. 488(3): p. 547-553
    [PMID:28526410]