PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g004237m | ||||||||
Common Name | CISIN_1g003544mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | ARF | ||||||||
Protein Properties | Length: 767aa MW: 85586.4 Da PI: 6.3312 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 72.7 | 4.7e-23 | 127 | 228 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 f+k+lt sd++++g +++p++ ae+ +++++ ++l+ +d++ +W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F + orange1.1g004237m 127 FCKTLTASDTSTHGGFSVPRRAAEKVfpsldfSLQPPA-QELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--W 215 99*****************************9777666.49************************************************..8 PP SSEE..EEEEE-S CS B3 87 rsefelvvkvfrk 99 +++ +l+++++r+ orange1.1g004237m 216 NEKNQLLLGIRRA 228 889999***9986 PP | |||||||
2 | Auxin_resp | 116.2 | 2.8e-38 | 253 | 336 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+t+s F+v++nPras+seFv+++ k++ka+ ++vsvGmRf+m fete+ss rr++Gt++g+sdldpvrW+nS+Wrs+k orange1.1g004237m 253 AAHAAATNSCFTVFFNPRASPSEFVIPLTKYVKAVFhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWSNSHWRSVK 336 79********************************86599******************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 8.11E-48 | 113 | 256 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.5E-39 | 120 | 242 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.78E-21 | 126 | 227 | No hit | No description |
Pfam | PF02362 | 1.9E-21 | 127 | 228 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 7.3E-23 | 127 | 229 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.97 | 127 | 229 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 3.7E-33 | 253 | 336 | IPR010525 | Auxin response factor |
SuperFamily | SSF54277 | 3.66E-6 | 687 | 762 | No hit | No description |
PROSITE profile | PS51745 | 22.045 | 691 | 766 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 767 aa Download sequence Send to blast |
MKLSTSGLCQ QGHEGDNKCL NSELWHACAG PLVSLPTVGT RVVYFPQGHS EQVAATTNKE 60 VDSHIPNYPN LPPQLICQLH NVTMHADVET DEVYAQMTLQ PLSPEEQKDT FVPIELGIPS 120 KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPSLDFSL QPPAQELIAR DLHDVEWKFR 180 HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VLFIWNEKNQ LLLGIRRAIR PPTVMPSSVL 240 SSDSMHIGLL AAAAHAAATN SCFTVFFNPR ASPSEFVIPL TKYVKAVFHT RVSVGMRFRM 300 LFETEESSVR RYMGTITGIS DLDPVRWSNS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT 360 TFPMYPSLFP LRLKRPWHPS TSSFNDNRDE TASGLNWLRG GTGEQGLTTL NFQSLGMFPW 420 MQQRVEPSFL GNDHNQQYQA MLAAGMQSGD PVRQQFMQLQ QPFQYLQQSG SQNPLQLKQQ 480 QHLLQQLNSQ AEDRAQQQQQ PQQHMYHDAL QIRTDELLQR QQSNLPSPSF SKANFMDSST 540 EISVSISPMQ NMLGSLPEGS GNLLNFSGAG PSMLRQQFPQ QSLGSKYEPS QVRDFVHSMS 600 LPSSYNGKDA AVGTENCNTD SQNSVVFGVH IDSSGLLLPT TVSSFTTSVD PGVSSMPLGD 660 SGFHNSMYGC MQDSSELLHN VGQIDQLTPT RTFVKVYKSG SVGRSLDISR FSSYNELREE 720 LGQMFGIEGK FEDPLRSGWQ LVFVDRENDV LLLGDDPWEI VLPIPV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-157 | 20 | 357 | 51 | 388 | Auxin response factor 5 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed in sepals at stages 11, 12 and 13 of flower development. Highly expressed in petals at stages 9-10, decreases at stage 11 and disappears after flower stage 12. In anthers, expressed at stage 11 in the tapetum, disappears early in stage 12 when the tapetum degrades and reappears throughout the anther late in stage 12 to persist at least until stage 13. In stamen filaments, expressed at stages 12 to 13, especially near the apical end of the filament. Expressed throughout the gynoecium at early stages up to stage 12, especially strongly in ovules. Expression in gynoecium decreases late in stage 12, but persists through stage 13, especially near the apical end including the style. Expressed in the mesocarp of the fruit and the carpel septum during fruit growth. {ECO:0000269|PubMed:16107481, ECO:0000269|PubMed:16829592}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the whole plant. {ECO:0000269|PubMed:10476078}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Regulates both stamen and gynoecium maturation. Promotes jasmonic acid production. Partially redundant with ARF6. Involved in fruit initiation. Acts as an inhibitor to stop further carpel development in the absence of fertilization and the generation of signals required to initiate fruit and seed development. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16107481, ECO:0000269|PubMed:16829592}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00033 | PBM | Transfer from AT5G37020 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by miR167. {ECO:0000269|PubMed:17021043}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024037279.1 | 0.0 | auxin response factor 8 isoform X2 | ||||
Swissprot | Q9FGV1 | 0.0 | ARFH_ARATH; Auxin response factor 8 | ||||
TrEMBL | A0A067EQF6 | 0.0 | A0A067EQF6_CITSI; Auxin response factor | ||||
STRING | XP_006430416.1 | 0.0 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G37020.2 | 0.0 | auxin response factor 8 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g004237m |