PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g004026m
Common NameCISIN_1g002869mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family HD-ZIP
Protein Properties Length: 779aa    MW: 85071.9 Da    PI: 6.0009
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g004026mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.76.3e-2177132156
                        TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
           Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                        +++ +++t++q++eLe+lF+++++p++++r eL+k+l L++rqVk+WFqNrR+++k
  orange1.1g004026m  77 KKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMK 132
                        688999***********************************************999 PP
2START203.21.1e-632845091206
                        HHHHHHHHHHHHHHHHC-TT-EEEE.....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....E CS
              START   1 elaeeaaqelvkkalaeepgWvkss.....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....k 78 
                        ela++a++elvk+a+ +ep+W +s      + +n +e+l++f++  +     + +ea+r++g+v+ ++  lve+l+d + +W e+++    +
  orange1.1g004026m 284 ELALAAMDELVKMAQTDEPLWIRSFegsgrQVLNHEEYLRTFTPCIGlkpngFVTEASRETGMVIINSLALVETLMDPN-RWAEMFPcmiaR 374
                        5899********************99*99999***********99989*9*9***************************.************ PP

                        EEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEE CS
              START  79 aetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghsk 163
                         +t++vissg      galqlm aelq+lsplvp R++ f+R+++q+ +g+w++vdvS+d  ++ +  + +v +++lpSg+++++++ng+sk
  orange1.1g004026m 375 TATTDVISSGmggtrnGALQLMHAELQVLSPLVPvREVNFLRFCKQHAEGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSK 466
                        ****************************************************************999************************* PP

                        EEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
              START 164 vtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                        vtwveh++++++++h+l+++l+ sg+ +ga++wvatlqrqce+
  orange1.1g004026m 467 VTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCEC 509
                        *****************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.07E-2060134IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.9E-2169134IPR009057Homeodomain-like
PROSITE profilePS5007117.24874134IPR001356Homeobox domain
SMARTSM003892.2E-1775138IPR001356Homeobox domain
CDDcd000861.69E-1876134No hitNo description
PfamPF000461.8E-1877132IPR001356Homeobox domain
PROSITE patternPS000270109132IPR017970Homeobox, conserved site
PROSITE profilePS5084844.451275512IPR002913START domain
SuperFamilySSF559613.3E-34277509No hitNo description
CDDcd088751.54E-126279508No hitNo description
SMARTSM002342.3E-47284509IPR002913START domain
PfamPF018521.6E-55284509IPR002913START domain
SuperFamilySSF559617.14E-24537771No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009827Biological Processplant-type cell wall modification
GO:0042335Biological Processcuticle development
GO:0043481Biological Processanthocyanin accumulation in tissues in response to UV light
GO:0048765Biological Processroot hair cell differentiation
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 779 aa     Download sequence    Send to blast
MMIPSVWVCD LVFQQQPNID NQGGGDLQLQ RMGESFEGII GRRSREDLLE HESRSGSDNM  60
DGASGDDLDA ADNPPRKKRY HRHTPQQIQE LESLFKECPH PDEKQRLELS KRLCLETRQV  120
KFWFQNRRTQ MKTQLERHEN SLLRQENDKL RAENMSIRDA MRNPICTNCG GPAIIGDISL  180
EEQHLRIENA RLKDELDRVC ALAGKFLGRP VSSMGPPPMP NSSLELGVGT INGFGGLSST  240
VTTTLPADFG TGISNALPVV MPPNRSGPGV TGLDRSIERS MFLELALAAM DELVKMAQTD  300
EPLWIRSFEG SGRQVLNHEE YLRTFTPCIG LKPNGFVTEA SRETGMVIIN SLALVETLMD  360
PNRWAEMFPC MIARTATTDV ISSGMGGTRN GALQLMHAEL QVLSPLVPVR EVNFLRFCKQ  420
HAEGVWAVVD VSIDTIRETS GAPAFVNCRR LPSGCVVQDM PNGYSKVTWV EHAEYDESQV  480
HQLYKPLIIS GMGFGAQRWV ATLQRQCECL AILMSTSVSA RDHTAITAGG RRSMLKLAQR  540
MTDNFCAGVC ASTVHKWNKL NAGNVDEDVR VMTRKSVDDP GEPPGIVLSA ATSVWLPVSP  600
QRLFNFLRDE RLRSEWDILS NGGPMQEMAH IAKGQDHGNC VSLLRASAIN ANQSSMLILQ  660
ETCTDAAGSL VVYAPVDIPA MHVVMNGGDS AYVALLPSGF AIVPDGPDSR GPLANGPTSG  720
NGSNGGSQRV GGSLLTVAFQ ILVNSLPTAK LTVESVETVN NLISCTVQKI KAALQCES*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.12170.0fruit| vegetative meristem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, leaves and floral buds. {ECO:0000269|PubMed:10402424}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269|PubMed:10402424}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00421DAPTransfer from AT4G00730Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006445143.10.0homeobox-leucine zipper protein ANTHOCYANINLESS 2 isoform X1
RefseqXP_006491020.10.0homeobox-leucine zipper protein ANTHOCYANINLESS 2 isoform X1
SwissprotQ0WV120.0ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
TrEMBLA0A067H2D20.0A0A067H2D2_CITSI; Uncharacterized protein
STRINGXP_006491020.10.0(Citrus sinensis)
STRINGXP_006445143.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]