PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g003954m

Common Name

CISIN_1g003954mg

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

HD-ZIP

Protein Properties

Length: 785aa MW: 85963.3 Da PI: 5.9139

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g003954m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	68.4	9e-22	95	150	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++k +++t++q++eLe++F+++++p++++r eL+++lgL+ +q+k+WFqNrR+++k orange1.1g003954m 95 KKKYHRHTPHQIQELESFFKECPHPDEKQRSELSRRLGLESKQIKFWFQNRRTQMK 150 79999************************************************999 PP
2	START	170.5	1.1e-53	292	516	2	206
HHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEE CS START 2 laeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kae 80 la++a++el+k+a+a++p+W ks + n++e++++f++ + + +ea+r++g+v+ ++ l e+++d + +W e+++ + + orange1.1g003954m 292 LALTAMDELIKMAEADSPLWIKSLdggrDVFNQEEYMRTFSPCIGmkpngFVTEASRETGMVIINSSALIETMMDAN-RWAEMFPcmiaRSA 382 6899*******************999999*******99889999*************************.***9999888 PP EEEEECTT.......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEE CS START 81 tlevissg.......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskv 164 t++v+ s galq+mvae+q+lsplvp R f+R+++q+ +g+w++vdvS+d +++ + ++ ++lpSg+++++++n++skv orange1.1g003954m 383 TTDVLLSPsvtgtknGALQVMVAEFQVLSPLVPvRQAKFLRFCKQHIEGVWAVVDVSIDTNREGLSADPFQTYRRLPSGFVVQDVPNNYSKV 474 888876667999999********************************************98889999999************** PP EEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 165 twvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206 tw+eh++++++++h l r+l++sg+ +ga +wvatlqrqce+ orange1.1g003954m 475 TWIEHAEYDESIVHHLCRPLLSSGMGFGAPKWVATLQRQCEC 516 **************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.3E-22	79	133	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.71E-20	82	152	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.815	92	152	IPR001356	Homeobox domain
SMART	SM00389	2.1E-19	94	156	IPR001356	Homeobox domain
Pfam	PF00046	2.6E-19	95	150	IPR001356	Homeobox domain
CDD	cd00086	4.18E-20	95	153	No hit	No description
PROSITE pattern	PS00027	0	127	150	IPR017970	Homeobox, conserved site
Gene3D	G3DSA:1.10.10.60	7.2E-4	134	180	IPR009057	Homeodomain-like
PROSITE profile	PS50848	38.84	282	519	IPR002913	START domain
SuperFamily	SSF55961	8.93E-29	283	516	No hit	No description
CDD	cd08875	1.36E-107	286	515	No hit	No description
SMART	SM00234	1.1E-32	291	516	IPR002913	START domain
Pfam	PF01852	3.5E-46	292	516	IPR002913	START domain
SuperFamily	SSF55961	1.03E-18	544	778	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 785 aa Download sequence Send to blast
MSFGSNSVGM GSRVVAEIFP HCHSMASGAI AQFPLSLSIK NAMDAGEMGL IGEQFDPSVV 60 GRIREEEFES RSGSDNVEGA SGDDQEANED GPPRKKKYHR HTPHQIQELE SFFKECPHPD 120 EKQRSELSRR LGLESKQIKF WFQNRRTQMK TQMERHENII LRQEHDKLRA ENEMLKDAMK 180 NPTCNNCGGP AVPGSVSNYE LQQLRIENAR LKDELGRICI LANKFLGRPL TSSAGPISPQ 240 GVNSSLELGV GRNGFGGVAN IPGSMMQTSL EFVEGPVMSL TMPHDRNMLI DLALTAMDEL 300 IKMAEADSPL WIKSLDGGRD VFNQEEYMRT FSPCIGMKPN GFVTEASRET GMVIINSSAL 360 IETMMDANRW AEMFPCMIAR SATTDVLLSP SVTGTKNGAL QVMVAEFQVL SPLVPVRQAK 420 FLRFCKQHIE GVWAVVDVSI DTNREGLSAD PFQTYRRLPS GFVVQDVPNN YSKVTWIEHA 480 EYDESIVHHL CRPLLSSGMG FGAPKWVATL QRQCECLAVL MSSTITVQDQ SGISPIGRKS 540 MLKLAQRMTY NFCSGVCASS VRKWDKLCVG NVGEDVRVLT RKNVNDPGEP PGVVLCAATT 600 VWLPMTRQRL FDFMRDERMR SEWDILSNGG PLQEMVHIAK GQAPGNCASL LRAGAMNVND 660 SGMLILQETW NDSSGSLVVY APVDVPSMSM VMNGGDSTCV ALLPSGFAIL PDGYFGHGGL 720 INSNGTMVKT EGSSNESGGC LLTVGFQILV NSLPTAKLTV ESVETVNNLI SCTIQKIKAA 780 VLET*

Sequence ? help Back to Top

Protein Sequence Length: 785 aa Download sequence Send to blast

MSFGSNSVGM GSRVVAEIFP HCHSMASGAI AQFPLSLSIK NAMDAGEMGL IGEQFDPSVV  60
GRIREEEFES RSGSDNVEGA SGDDQEANED GPPRKKKYHR HTPHQIQELE SFFKECPHPD  120
EKQRSELSRR LGLESKQIKF WFQNRRTQMK TQMERHENII LRQEHDKLRA ENEMLKDAMK  180
NPTCNNCGGP AVPGSVSNYE LQQLRIENAR LKDELGRICI LANKFLGRPL TSSAGPISPQ  240
GVNSSLELGV GRNGFGGVAN IPGSMMQTSL EFVEGPVMSL TMPHDRNMLI DLALTAMDEL  300
IKMAEADSPL WIKSLDGGRD VFNQEEYMRT FSPCIGMKPN GFVTEASRET GMVIINSSAL  360
IETMMDANRW AEMFPCMIAR SATTDVLLSP SVTGTKNGAL QVMVAEFQVL SPLVPVRQAK  420
FLRFCKQHIE GVWAVVDVSI DTNREGLSAD PFQTYRRLPS GFVVQDVPNN YSKVTWIEHA  480
EYDESIVHHL CRPLLSSGMG FGAPKWVATL QRQCECLAVL MSSTITVQDQ SGISPIGRKS  540
MLKLAQRMTY NFCSGVCASS VRKWDKLCVG NVGEDVRVLT RKNVNDPGEP PGVVLCAATT  600
VWLPMTRQRL FDFMRDERMR SEWDILSNGG PLQEMVHIAK GQAPGNCASL LRAGAMNVND  660
SGMLILQETW NDSSGSLVVY APVDVPSMSM VMNGGDSTCV ALLPSGFAIL PDGYFGHGGL  720
INSNGTMVKT EGSSNESGGC LLTVGFQILV NSLPTAKLTV ESVETVNNLI SCTIQKIKAA  780
VLET*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, stems, leaves and floral buds. {ECO:0000269\|PubMed:10402424}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269\|PubMed:10402424}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006490345.1	0.0	homeobox-leucine zipper protein ANTHOCYANINLESS 2-like isoform X1
Swissprot	Q0WV12	0.0	ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
TrEMBL	A0A067EY32	0.0	A0A067EY32_CITSI; Uncharacterized protein
STRING	XP_006490345.1	0.0	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1128	27	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G00730.1	0.0	HD-ZIP family protein

Link Out ? help Back to Top
Phytozome	orange1.1g003954m

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]