PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g003592m | ||||||||
Common Name | CISIN_1g003580mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | ARF | ||||||||
Protein Properties | Length: 809aa MW: 89641.4 Da PI: 7.0458 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 75.6 | 5.8e-24 | 172 | 273 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 f+k+lt sd++++g +++p++ ae++ + +++ s++l+ +d++g +W++++iyr++++r++lt+GW+ Fv++++L +gD v+F + orange1.1g003592m 172 FCKTLTASDTSTHGGFSVPRRAAEDCfppldyK-QQRPSQELVAKDLHGVEWRFRHIYRGQPRRHLLTTGWSIFVSQKNLVSGDAVLFL--R 260 99****************************963.3445679************************************************..4 PP SSEE..EEEEE-S CS B3 87 rsefelvvkvfrk 99 +++el+++++r+ orange1.1g003592m 261 GKDGELRLGIRRS 273 499999****996 PP | |||||||
2 | Auxin_resp | 121.1 | 8.5e-40 | 298 | 379 | 1 | 82 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 +a+a+stks+F+v+Y+Pra++++Fv++++k++k + +++++G+Rfkm+fe++ds+err+ G+v+g++dldp+rWpnSkWr+L orange1.1g003592m 298 VANAVSTKSMFHVFYSPRATHADFVIPYQKYVKIIMNPICIGTRFKMRFEMDDSPERRCNGVVTGITDLDPYRWPNSKWRCL 379 689******************************************************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.07E-43 | 164 | 287 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.9E-40 | 165 | 283 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.23E-23 | 170 | 272 | No hit | No description |
SMART | SM01019 | 1.0E-23 | 172 | 274 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.9E-22 | 172 | 273 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.999 | 172 | 274 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.6E-33 | 298 | 379 | IPR010525 | Auxin response factor |
SuperFamily | SSF54277 | 1.83E-9 | 675 | 758 | No hit | No description |
Pfam | PF02309 | 2.1E-5 | 677 | 763 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 19.689 | 679 | 761 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0010050 | Biological Process | vegetative phase change | ||||
GO:0010158 | Biological Process | abaxial cell fate specification | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 809 aa Download sequence Send to blast |
MEFDLNHAAT TEGEKIAFCN GDCGKNNSGC VCYLNSSSSS SSCSANSSSS SSLSSSIYFE 60 LWHACAGPLT SLPKKGNVVV YFPQGHLEQV ASSSAFPPIE VPNFDLQPQI FCKVVDVQLL 120 ANKENDEVYT QVALLPQPEL EGLNLEAKQL EDLGVDEEGG GRSPTKSTPH MFCKTLTASD 180 TSTHGGFSVP RRAAEDCFPP LDYKQQRPSQ ELVAKDLHGV EWRFRHIYRG QPRRHLLTTG 240 WSIFVSQKNL VSGDAVLFLR GKDGELRLGI RRSVQPRNGL PDSILSKQNS YPNVLSVVAN 300 AVSTKSMFHV FYSPRATHAD FVIPYQKYVK IIMNPICIGT RFKMRFEMDD SPERRCNGVV 360 TGITDLDPYR WPNSKWRCLM VRWDECIGSD HQEQVSPWEI DRSVSLPPLS IQSSPRMKKL 420 RTGLQAPPPD YPVSARGGGV LDFEESVRSS KVLQGQENVG FVSPLYGCDT VNHPLGFEMR 480 APAHQSLALN GIRKDNINEL VRALPTSYTG FVESNRFPKV LQGQEICPLR SLTGKVDLNL 540 GTWGKPNFGC NSMNMYQASK PNIYPPPSES LSNMFFPYGD MPKTVQHHTM PPYASNLQRE 600 NVKLNSSSIQ MPAIGAEIRK ANLLNEHKPV ENIPTPTFKA NMRSHKDGSF NGTAAGCKLF 660 GFSLTSETPT PSSQSPGKRS CTKVHKQGSL VGRAIDLWRL NGYNDLLSEL EHLFNMEGLL 720 RDPAKGWRIL YTDSENDVMV VGDDPWHEFC NEVSKIHIYT QEEVEKMTIG TTDDTQSCLD 780 QAPVIMEVSV SKSSSVSQPD SSPTVVRV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldy_A | 1e-117 | 53 | 401 | 15 | 353 | Auxin response factor 1 |
4ldy_B | 1e-117 | 53 | 401 | 15 | 353 | Auxin response factor 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Csi.17937 | 0.0 | flower |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the whole plant. {ECO:0000269|PubMed:10476078}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006424619.1 | 0.0 | auxin response factor 4 isoform X2 | ||||
Refseq | XP_006488136.1 | 0.0 | auxin response factor 4 isoform X2 | ||||
Swissprot | Q9ZTX9 | 0.0 | ARFD_ARATH; Auxin response factor 4 | ||||
TrEMBL | A0A067GCZ5 | 0.0 | A0A067GCZ5_CITSI; Auxin response factor | ||||
STRING | XP_006424619.1 | 0.0 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60450.1 | 0.0 | auxin response factor 4 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g003592m |