PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g003506m
Common NameCISIN_1g002390mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ARF
Protein Properties Length: 816aa    MW: 89969.7 Da    PI: 6.3853
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g003506mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.61.2e-2345146199
                        EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                        f+k+lt sd++++g +++p++ ae+        + +++  ++l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   
  orange1.1g003506m  45 FCKTLTASDTSTHGGFSVPRRAAEKVfppldysQTPPA--QELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI-- 132
                        99****************************97544444..48************************************************.. PP

                        SSSEE..EEEEE-S CS
                 B3  86 grsefelvvkvfrk 99 
                        ++++ +l+++++r+
  orange1.1g003506m 133 WNEKNQLLLGIRRA 146
                        8899999****997 PP

2Auxin_resp121.85e-40171254183
         Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                        aahaa+t+s F+++YnPras+seFv++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdldpvrWpnS+Wrs+k
  orange1.1g003506m 171 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVK 254
                        79*********************************9789******************************************985 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.01E-4830174IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.6E-4238160IPR015300DNA-binding pseudobarrel domain
CDDcd100178.98E-2244145No hitNo description
SMARTSM010195.8E-2445147IPR003340B3 DNA binding domain
PROSITE profilePS5086312.47845147IPR003340B3 DNA binding domain
PfamPF023628.7E-2245146IPR003340B3 DNA binding domain
PfamPF065076.9E-35171254IPR010525Auxin response factor
SuperFamilySSF542773.79E-8674756No hitNo description
PfamPF023095.1E-7675764IPR033389AUX/IAA domain
PROSITE profilePS5174526.083682766IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 816 aa     Download sequence    Send to blast
MHADVETDEV YAQMTLQPLS PQEQKDVYLL PAELGAPNKQ PTNYFCKTLT ASDTSTHGGF  60
SVPRRAAEKV FPPLDYSQTP PAQELIARDL HDNEWKFRHI FRGQPKRHLL TTGWSVFVSA  120
KRLVAGDSVL FIWNEKNQLL LGIRRATRPQ TVMPSSVLSS DSMHIGLLAA AAHAAATNSR  180
FTIFYNPRAS PSEFVIPLAK YVKAVYHTRV SVGMRFRMLF ETEESSVRRY MGTITGISDL  240
DPVRWPNSHW RSVKVGWDES TAGERQPRVS LWEIEPLTTF PMYSSPFPLR LKRPWPSGLP  300
SFHGMKDGDM SINSPLMWLQ GGVGDQGIQS LNFQGYGVTP WMQPRLDASI PGLQPDVYQA  360
MAAAALQEMR TVDSSKLASQ SLLQFQQSQN VSNGTASMIP RQMLQQSQAQ NALLQSFQEN  420
QASAQAQLLQ QQLQRQHSYN EQRQQQQQVQ QSQQLHQLSV QPQISNVIST LPHLASSSQS  480
QPPTLQTVAS QCQQSNFSDS LGNPIASSDV SSMHTILGSL SQAGASHLLN SNASNPIISS  540
SAMLTKQVTV DNHVPSAVSH CILPQVEQLG AQQSNVSELA SLLPPFPGRE YSSYHGSGDP  600
QNNLLFGVSI DSSLMGQNGL PNLKNISSEN ESLSLPYAAS NFTNNVGTDF PLNSDMTTSS  660
CVDESGFLQS SENVDQVNPP TRTFVKVHKS GSFGRSLDIS KFSSYDELRS ELARMFGLEG  720
QLEDPQRSGW QLVFVDREND VLLLGDDPWQ EFVNNVGYIK ILSPLEVQQM GKGLSPVTSG  780
PGQRLSSNNN FDDYVSRQEL RSSSNGVASM GSINY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1261275115388Auxin response factor 5
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.166360.0callus| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006468969.10.0auxin response factor 6-like
SwissprotA2X1A10.0ARFF_ORYSI; Auxin response factor 6
SwissprotQ6H6V40.0ARFF_ORYSJ; Auxin response factor 6
TrEMBLA0A067FJ090.0A0A067FJ09_CITSI; Auxin response factor
STRINGXP_006468969.10.0(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.20.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]