PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g003505m | ||||||||
Common Name | CISIN_1g002390mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | ARF | ||||||||
Protein Properties | Length: 816aa MW: 89969.7 Da PI: 6.3853 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 74.6 | 1.2e-23 | 45 | 146 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 f+k+lt sd++++g +++p++ ae+ + +++ ++l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F orange1.1g003505m 45 FCKTLTASDTSTHGGFSVPRRAAEKVfppldysQTPPA--QELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI-- 132 99****************************97544444..48************************************************.. PP SSSEE..EEEEE-S CS B3 86 grsefelvvkvfrk 99 ++++ +l+++++r+ orange1.1g003505m 133 WNEKNQLLLGIRRA 146 8899999****997 PP | |||||||
2 | Auxin_resp | 121.8 | 5e-40 | 171 | 254 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+t+s F+++YnPras+seFv++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdldpvrWpnS+Wrs+k orange1.1g003505m 171 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVK 254 79*********************************9789******************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 1.01E-48 | 30 | 174 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 5.6E-42 | 38 | 160 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 8.98E-22 | 44 | 145 | No hit | No description |
SMART | SM01019 | 5.8E-24 | 45 | 147 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.478 | 45 | 147 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 8.7E-22 | 45 | 146 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 6.9E-35 | 171 | 254 | IPR010525 | Auxin response factor |
SuperFamily | SSF54277 | 3.79E-8 | 674 | 756 | No hit | No description |
Pfam | PF02309 | 5.1E-7 | 675 | 764 | IPR033389 | AUX/IAA domain |
PROSITE profile | PS51745 | 26.083 | 682 | 766 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 816 aa Download sequence Send to blast |
MHADVETDEV YAQMTLQPLS PQEQKDVYLL PAELGAPNKQ PTNYFCKTLT ASDTSTHGGF 60 SVPRRAAEKV FPPLDYSQTP PAQELIARDL HDNEWKFRHI FRGQPKRHLL TTGWSVFVSA 120 KRLVAGDSVL FIWNEKNQLL LGIRRATRPQ TVMPSSVLSS DSMHIGLLAA AAHAAATNSR 180 FTIFYNPRAS PSEFVIPLAK YVKAVYHTRV SVGMRFRMLF ETEESSVRRY MGTITGISDL 240 DPVRWPNSHW RSVKVGWDES TAGERQPRVS LWEIEPLTTF PMYSSPFPLR LKRPWPSGLP 300 SFHGMKDGDM SINSPLMWLQ GGVGDQGIQS LNFQGYGVTP WMQPRLDASI PGLQPDVYQA 360 MAAAALQEMR TVDSSKLASQ SLLQFQQSQN VSNGTASMIP RQMLQQSQAQ NALLQSFQEN 420 QASAQAQLLQ QQLQRQHSYN EQRQQQQQVQ QSQQLHQLSV QPQISNVIST LPHLASSSQS 480 QPPTLQTVAS QCQQSNFSDS LGNPIASSDV SSMHTILGSL SQAGASHLLN SNASNPIISS 540 SAMLTKQVTV DNHVPSAVSH CILPQVEQLG AQQSNVSELA SLLPPFPGRE YSSYHGSGDP 600 QNNLLFGVSI DSSLMGQNGL PNLKNISSEN ESLSLPYAAS NFTNNVGTDF PLNSDMTTSS 660 CVDESGFLQS SENVDQVNPP TRTFVKVHKS GSFGRSLDIS KFSSYDELRS ELARMFGLEG 720 QLEDPQRSGW QLVFVDREND VLLLGDDPWQ EFVNNVGYIK ILSPLEVQQM GKGLSPVTSG 780 PGQRLSSNNN FDDYVSRQEL RSSSNGVASM GSINY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-126 | 1 | 275 | 115 | 388 | Auxin response factor 5 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Csi.16636 | 0.0 | callus| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006468969.1 | 0.0 | auxin response factor 6-like | ||||
Swissprot | A2X1A1 | 0.0 | ARFF_ORYSI; Auxin response factor 6 | ||||
Swissprot | Q6H6V4 | 0.0 | ARFF_ORYSJ; Auxin response factor 6 | ||||
TrEMBL | A0A067FJ09 | 0.0 | A0A067FJ09_CITSI; Auxin response factor | ||||
STRING | XP_006468969.1 | 0.0 | (Citrus sinensis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30330.2 | 0.0 | auxin response factor 6 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g003505m |
Publications ? help Back to Top | |||
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