PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g003323m
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family TALE
Protein Properties Length: 831aa    MW: 89310.9 Da    PI: 6.94
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g003323mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.33e-095996361954
                        HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
           Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                        Fe   ++yps +++  LA+++gL+ +qV++WF N R +
  orange1.1g003323m 599 FEHflHPYPSDADKHLLARQTGLSRNQVSNWFINARVR 636
                        564459******************************88 PP

2BELL1222.6e-39459530172
               BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                        +r e+q++k+kLls+l+eVd+rY++y+eq+q+v+ sF+ v+g g+a pYt+lA+ka+SrhFrcLkdaia q+
  orange1.1g003323m 459 DRIEHQRRKVKLLSMLDEVDRRYNHYCEQMQMVVTSFDLVMGFGAAVPYTALAQKAMSRHFRCLKDAIAAQL 530
                        589******************************************************************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005742.5E-82387528IPR006563POX domain
PfamPF075266.9E-52392527IPR006563POX domain
PROSITE profilePS5007112.6577640IPR001356Homeobox domain
CDDcd000866.40E-13580641No hitNo description
SMARTSM003892.5E-9580644IPR001356Homeobox domain
SuperFamilySSF466893.94E-17582647IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.0E-28583646IPR009057Homeodomain-like
PfamPF059204.3E-18597636IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009965Biological Processleaf morphogenesis
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 831 aa     Download sequence    Send to blast
MGIATPPTPA VIRIGESHNN NPIPSIQSDK SNCTNSMSQD YHHQAGIFSF SNGFERSAVT  60
HHQERQQHTA QQIRRDKLRV QGGYEQPPPP LVGIEEEDQS TELPVYDTAG MLSEMFNFPP  120
GGGGGAASTD QLLDQPIQLQ SSYRTPRPTP AADWYGGNRQ GMLAIGGLGS LGDTKDHNDR  180
DSLAQQHHHH HHHHHQISGV NADSAAAMQL FLMNPQPRSP SPASAPHSTS SSTLHMLLPA  240
PSAATSLQGF SVSGAAAAAA FGTNNNTSVI SQPQLSWLPV PDSGAHHEGA AGNNNPNEIA  300
GVVEGQGLSL SLSSSLQHLE AAKAEELRMG DGGLLYYNTQ VGASSSGTIH HHQFNQFKNL  360
GIHQQPLHLQ TGAGQNHQVR VGYGSSLGVV NVLRNSKYAK AAQELLEEFC SVGRGQFKKS  420
KFGKNNTNPS SSSGGGGGGV GCGGSSSSTK DLPPLSAADR IEHQRRKVKL LSMLDEVDRR  480
YNHYCEQMQM VVTSFDLVMG FGAAVPYTAL AQKAMSRHFR CLKDAIAAQL KQSCELLGEK  540
DVAGTSGITK GETPRLKLLE QSLRQQRAFH QMGMMEQEAW RPQRGLPERS VNILRSWLFE  600
HFLHPYPSDA DKHLLARQTG LSRNQVSNWF INARVRLWKP MVEEMYQQEA KEGEESQERE  660
INQSNGNNNN GIAQTPTPST TTTAAAAASS TTITPTGKRS EINEPESSPS LIAINRQCFS  720
ETHAKQSGAS STNIITPNNS TDHEVAPPIS PSFPVTHIVD DTCRRGSVMA TDHNYGTTAG  780
IAAADHIAAG STLISFGTTA GDVSLTLGLH HAGNMPDHTS SFSVRDFGDC *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A2e-16586643158Homeobox protein Meis1
4xrs_B2e-16586643158Homeobox protein Meis1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in lateral organs. {ECO:0000269|PubMed:17873098}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006425771.10.0BEL1-like homeodomain protein 4
RefseqXP_006466698.10.0BEL1-like homeodomain protein 4
SwissprotQ9SW801e-172BLH2_ARATH; BEL1-like homeodomain protein 2
TrEMBLV4SPH40.0V4SPH4_9ROSI; Uncharacterized protein
STRINGXP_006466698.10.0(Citrus sinensis)
STRINGXP_006425771.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21662466
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36870.21e-154BEL1-like homeodomain 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]