PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g003323m | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | TALE | ||||||||
Protein Properties | Length: 831aa MW: 89310.9 Da PI: 6.94 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 28.3 | 3e-09 | 599 | 636 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yps +++ LA+++gL+ +qV++WF N R + orange1.1g003323m 599 FEHflHPYPSDADKHLLARQTGLSRNQVSNWFINARVR 636 564459******************************88 PP | |||||||
2 | BELL | 122 | 2.6e-39 | 459 | 530 | 1 | 72 |
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 +r e+q++k+kLls+l+eVd+rY++y+eq+q+v+ sF+ v+g g+a pYt+lA+ka+SrhFrcLkdaia q+ orange1.1g003323m 459 DRIEHQRRKVKLLSMLDEVDRRYNHYCEQMQMVVTSFDLVMGFGAAVPYTALAQKAMSRHFRCLKDAIAAQL 530 589******************************************************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 2.5E-82 | 387 | 528 | IPR006563 | POX domain |
Pfam | PF07526 | 6.9E-52 | 392 | 527 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.6 | 577 | 640 | IPR001356 | Homeobox domain |
CDD | cd00086 | 6.40E-13 | 580 | 641 | No hit | No description |
SMART | SM00389 | 2.5E-9 | 580 | 644 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 3.94E-17 | 582 | 647 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.0E-28 | 583 | 646 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 4.3E-18 | 597 | 636 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 831 aa Download sequence Send to blast |
MGIATPPTPA VIRIGESHNN NPIPSIQSDK SNCTNSMSQD YHHQAGIFSF SNGFERSAVT 60 HHQERQQHTA QQIRRDKLRV QGGYEQPPPP LVGIEEEDQS TELPVYDTAG MLSEMFNFPP 120 GGGGGAASTD QLLDQPIQLQ SSYRTPRPTP AADWYGGNRQ GMLAIGGLGS LGDTKDHNDR 180 DSLAQQHHHH HHHHHQISGV NADSAAAMQL FLMNPQPRSP SPASAPHSTS SSTLHMLLPA 240 PSAATSLQGF SVSGAAAAAA FGTNNNTSVI SQPQLSWLPV PDSGAHHEGA AGNNNPNEIA 300 GVVEGQGLSL SLSSSLQHLE AAKAEELRMG DGGLLYYNTQ VGASSSGTIH HHQFNQFKNL 360 GIHQQPLHLQ TGAGQNHQVR VGYGSSLGVV NVLRNSKYAK AAQELLEEFC SVGRGQFKKS 420 KFGKNNTNPS SSSGGGGGGV GCGGSSSSTK DLPPLSAADR IEHQRRKVKL LSMLDEVDRR 480 YNHYCEQMQM VVTSFDLVMG FGAAVPYTAL AQKAMSRHFR CLKDAIAAQL KQSCELLGEK 540 DVAGTSGITK GETPRLKLLE QSLRQQRAFH QMGMMEQEAW RPQRGLPERS VNILRSWLFE 600 HFLHPYPSDA DKHLLARQTG LSRNQVSNWF INARVRLWKP MVEEMYQQEA KEGEESQERE 660 INQSNGNNNN GIAQTPTPST TTTAAAAASS TTITPTGKRS EINEPESSPS LIAINRQCFS 720 ETHAKQSGAS STNIITPNNS TDHEVAPPIS PSFPVTHIVD DTCRRGSVMA TDHNYGTTAG 780 IAAADHIAAG STLISFGTTA GDVSLTLGLH HAGNMPDHTS SFSVRDFGDC * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4xrs_A | 2e-16 | 586 | 643 | 1 | 58 | Homeobox protein Meis1 |
4xrs_B | 2e-16 | 586 | 643 | 1 | 58 | Homeobox protein Meis1 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in lateral organs. {ECO:0000269|PubMed:17873098}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006425771.1 | 0.0 | BEL1-like homeodomain protein 4 | ||||
Refseq | XP_006466698.1 | 0.0 | BEL1-like homeodomain protein 4 | ||||
Swissprot | Q9SW80 | 1e-172 | BLH2_ARATH; BEL1-like homeodomain protein 2 | ||||
TrEMBL | V4SPH4 | 0.0 | V4SPH4_9ROSI; Uncharacterized protein | ||||
STRING | XP_006466698.1 | 0.0 | (Citrus sinensis) | ||||
STRING | XP_006425771.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2166 | 24 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36870.2 | 1e-154 | BEL1-like homeodomain 2 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g003323m |
Publications ? help Back to Top | |||
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