PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g003298m
Common NameCISIN_1g002390mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ARF
Protein Properties Length: 834aa    MW: 92039.2 Da    PI: 6.4749
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g003298mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.51.2e-23128229199
                        EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                        f+k+lt sd++++g +++p++ ae+        + +++  ++l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   
  orange1.1g003298m 128 FCKTLTASDTSTHGGFSVPRRAAEKVfppldysQTPPA--QELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI-- 215
                        99****************************97544444..48************************************************.. PP

                        SSSEE..EEEEE-S CS
                 B3  86 grsefelvvkvfrk 99 
                        ++++ +l+++++r+
  orange1.1g003298m 216 WNEKNQLLLGIRRA 229
                        8899999****997 PP
2Auxin_resp121.85.1e-40254337183
         Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                        aahaa+t+s F+++YnPras+seFv++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdldpvrWpnS+Wrs+k
  orange1.1g003298m 254 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVK 337
                        79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.05E-48113257IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.8E-42121243IPR015300DNA-binding pseudobarrel domain
CDDcd100179.37E-22127228No hitNo description
PfamPF023629.0E-22128229IPR003340B3 DNA binding domain
PROSITE profilePS5086312.478128230IPR003340B3 DNA binding domain
SMARTSM010195.8E-24128230IPR003340B3 DNA binding domain
PfamPF065077.1E-35254337IPR010525Auxin response factor
SuperFamilySSF542775.17E-6757833No hitNo description
PROSITE profilePS5174525.001765833IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 834 aa     Download sequence    Send to blast
MRLATSGFNQ QTQEGEKKCL NSELWHACAG PLVSLPPVGS RVVYFPQGHS EQVAASTNKE  60
VDAHIPNYPN LPPQLICQLH NLTMHADVET DEVYAQMTLQ PLSPQEQKDV YLLPAELGAP  120
NKQPTNYFCK TLTASDTSTH GGFSVPRRAA EKVFPPLDYS QTPPAQELIA RDLHDNEWKF  180
RHIFRGQPKR HLLTTGWSVF VSAKRLVAGD SVLFIWNEKN QLLLGIRRAT RPQTVMPSSV  240
LSSDSMHIGL LAAAAHAAAT NSRFTIFYNP RASPSEFVIP LAKYVKAVYH TRVSVGMRFR  300
MLFETEESSV RRYMGTITGI SDLDPVRWPN SHWRSVKVGW DESTAGERQP RVSLWEIEPL  360
TTFPMYSSPF PLRLKRPWPS GLPSFHGMKD GDMSINSPLM WLQGGVGDQG IQSLNFQGYG  420
VTPWMQPRLD ASIPGLQPDV YQAMAAAALQ EMRTVDSSKL ASQSLLQFQQ SQNVSNGTAS  480
MIPRQMLQQS QAQNALLQSF QENQASAQAQ LLQQQLQRQH SYNEQRQQQQ QVQQSQQLHQ  540
LSVQPQISNV ISTLPHLASS SQSQPPTLQT VASQCQQSNF SDSLGNPIAS SDVSSMHTIL  600
GSLSQAGASH LLNSNASNPI ISSSAMLTKQ VTVDNHVPSA VSHCILPQVE QLGAQQSNVS  660
ELASLLPPFP GREYSSYHGS GDPQNNLLFG VSIDSSLMGQ NGLPNLKNIS SENESLSLPY  720
AASNFTNNVG TDFPLNSDMT TSSCVDESGF LQSSENVDQV NPPTRTFVKV HKSGSFGRSL  780
DISKFSSYDE LRSELARMFG LEGQLEDPQR SGWQLVFVDR ENDVLLLGDD PWQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1651135841388Auxin response factor 5
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.166361e-118callus| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006468969.10.0auxin response factor 6-like
SwissprotA2X1A10.0ARFF_ORYSI; Auxin response factor 6
SwissprotQ6H6V40.0ARFF_ORYSJ; Auxin response factor 6
TrEMBLA0A067F7V40.0A0A067F7V4_CITSI; Auxin response factor
STRINGXP_006468969.10.0(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]