PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g003261m
Common NameCISIN_1g002869mg, LOC102627611
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family HD-ZIP
Protein Properties Length: 836aa    MW: 90791 Da    PI: 6.1826
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g003261mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.66.9e-21134189156
                        TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
           Homeobox   1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                        +++ +++t++q++eLe+lF+++++p++++r eL+k+l L++rqVk+WFqNrR+++k
  orange1.1g003261m 134 KKRYHRHTPQQIQELESLFKECPHPDEKQRLELSKRLCLETRQVKFWFQNRRTQMK 189
                        688999***********************************************999 PP
2START2031.2e-633415661206
                        HHHHHHHHHHHHHHHHC-TT-EEEE.....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....E CS
              START   1 elaeeaaqelvkkalaeepgWvkss.....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....k 78 
                        ela++a++elvk+a+ +ep+W +s      + +n +e+l++f++  +     + +ea+r++g+v+ ++  lve+l+d + +W e+++    +
  orange1.1g003261m 341 ELALAAMDELVKMAQTDEPLWIRSFegsgrQVLNHEEYLRTFTPCIGlkpngFVTEASRETGMVIINSLALVETLMDPN-RWAEMFPcmiaR 431
                        5899********************99*99999***********99989*9*9***************************.************ PP

                        EEEEEEECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEE CS
              START  79 aetlevissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghsk 163
                         +t++vissg      galqlm aelq+lsplvp R++ f+R+++q+ +g+w++vdvS+d  ++ +  + +v +++lpSg+++++++ng+sk
  orange1.1g003261m 432 TATTDVISSGmggtrnGALQLMHAELQVLSPLVPvREVNFLRFCKQHAEGVWAVVDVSIDTIRETSGAPAFVNCRRLPSGCVVQDMPNGYSK 523
                        ****************************************************************999************************* PP

                        EEEEE-EE--SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS
              START 164 vtwvehvdlkgrlphwllrslvksglaegaktwvatlqrqcek 206
                        vtwveh++++++++h+l+++l+ sg+ +ga++wvatlqrqce+
  orange1.1g003261m 524 VTWVEHAEYDESQVHQLYKPLIISGMGFGAQRWVATLQRQCEC 566
                        *****************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.2E-20117191IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.1E-21126191IPR009057Homeodomain-like
PROSITE profilePS5007117.248131191IPR001356Homeobox domain
SMARTSM003892.2E-17132195IPR001356Homeobox domain
CDDcd000861.92E-18133191No hitNo description
PfamPF000462.0E-18134189IPR001356Homeobox domain
PROSITE patternPS000270166189IPR017970Homeobox, conserved site
PROSITE profilePS5084844.451332569IPR002913START domain
SuperFamilySSF559613.71E-34334566No hitNo description
CDDcd088751.71E-126336565No hitNo description
SMARTSM002342.3E-47341566IPR002913START domain
PfamPF018521.9E-55341566IPR002913START domain
SuperFamilySSF559617.85E-24594828No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009827Biological Processplant-type cell wall modification
GO:0042335Biological Processcuticle development
GO:0043481Biological Processanthocyanin accumulation in tissues in response to UV light
GO:0048765Biological Processroot hair cell differentiation
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 836 aa     Download sequence    Send to blast
MSFGGFLENN ISTSSGGGGA RIVADISYTN NDNNNNNNMP TTTTLAHPRL LSSTPQPLSK  60
SMFNSPGLSL ALQPNIDNQG GGDLQLQRMG ESFEGIIGRR SREDLLEHES RSGSDNMDGA  120
SGDDLDAADN PPRKKRYHRH TPQQIQELES LFKECPHPDE KQRLELSKRL CLETRQVKFW  180
FQNRRTQMKT QLERHENSLL RQENDKLRAE NMSIRDAMRN PICTNCGGPA IIGDISLEEQ  240
HLRIENARLK DELDRVCALA GKFLGRPVSS MGPPPMPNSS LELGVGTING FGGLSSTVTT  300
TLPADFGTGI SNALPVVMPP NRSGPGVTGL DRSIERSMFL ELALAAMDEL VKMAQTDEPL  360
WIRSFEGSGR QVLNHEEYLR TFTPCIGLKP NGFVTEASRE TGMVIINSLA LVETLMDPNR  420
WAEMFPCMIA RTATTDVISS GMGGTRNGAL QLMHAELQVL SPLVPVREVN FLRFCKQHAE  480
GVWAVVDVSI DTIRETSGAP AFVNCRRLPS GCVVQDMPNG YSKVTWVEHA EYDESQVHQL  540
YKPLIISGMG FGAQRWVATL QRQCECLAIL MSTSVSARDH TAITAGGRRS MLKLAQRMTD  600
NFCAGVCAST VHKWNKLNAG NVDEDVRVMT RKSVDDPGEP PGIVLSAATS VWLPVSPQRL  660
FNFLRDERLR SEWDILSNGG PMQEMAHIAK GQDHGNCVSL LRASAINANQ SSMLILQETC  720
TDAAGSLVVY APVDIPAMHV VMNGGDSAYV ALLPSGFAIV PDGPDSRGPL ANGPTSGNGS  780
NGGSQRVGGS LLTVAFQILV NSLPTAKLTV ESVETVNNLI SCTVQKIKAA LQCES*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.12170.0fruit| vegetative meristem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stems, leaves and floral buds. {ECO:0000269|PubMed:10402424}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of the tissue-specific accumulation of anthocyanins and in cellular organization of the primary root. {ECO:0000269|PubMed:10402424}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00421DAPTransfer from AT4G00730Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006445141.10.0homeobox-leucine zipper protein ANTHOCYANINLESS 2 isoform X2
RefseqXP_006491021.10.0homeobox-leucine zipper protein ANTHOCYANINLESS 2 isoform X2
SwissprotQ0WV120.0ANL2_ARATH; Homeobox-leucine zipper protein ANTHOCYANINLESS 2
TrEMBLA0A067H2C90.0A0A067H2C9_CITSI; Uncharacterized protein
TrEMBLV4U8590.0V4U859_9ROSI; Uncharacterized protein
STRINGXP_006491020.10.0(Citrus sinensis)
STRINGXP_006445143.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00730.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]