PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g003075m
Common NameCISIN_1g003069mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family HD-ZIP
Protein Properties Length: 851aa    MW: 93058.3 Da    PI: 6.4643
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g003075mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.81.8e-182078357
                       --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
           Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                       k  ++t+eq+e+Le+++ ++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  orange1.1g003075m 20 KYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 78
                       6789*****************************************************97 PP
2START170.31.3e-531693762204
                        HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEE CS
              START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..gal 91 
                        +aee+++e+++ka+ ++  Wv++  +++g++++ +++ s+++sg a+ra+g+v  +++   +e+l+d + W ++++  ++l vi +g  g++
  orange1.1g003075m 169 VAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLDPT-KIAEILKDCPSWFRDCRCLDVLSVIPTGngGTI 259
                        6899******************************************************.8999999999*********************** PP

                        EEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHH CS
              START  92 qlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphw 179
                        +l++++++a+++l++ Rdf+ +Ry+ +l++g++v++++S++s +  p+    ss+vRae+l Sg+li+p+++g+s +++v+hvdl+++++++
  orange1.1g003075m 260 ELIYMQTYAPTTLAAaRDFWLLRYSTSLEDGSLVVCERSLTSSTGGPTgppPSSFVRAEMLASGFLIRPCEGGGSIIHIVDHVDLDAWSVPE 351
                        ******************************************99999888899*************************************** PP

                        HHHHHHHHHHHHHHHHHHHHTXXXX CS
              START 180 llrslvksglaegaktwvatlqrqc 204
                        +lr+l++s+ + ++k+++a++++ +
  orange1.1g003075m 352 VLRPLYESSKILAQKMTMAAMRHIR 376
                        ********************99765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.3371579IPR001356Homeobox domain
SMARTSM003892.8E-151783IPR001356Homeobox domain
SuperFamilySSF466892.01E-162082IPR009057Homeodomain-like
CDDcd000863.00E-162080No hitNo description
PfamPF000464.7E-162078IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.7E-182278IPR009057Homeodomain-like
CDDcd146862.39E-672111No hitNo description
PROSITE profilePS5084825.265159387IPR002913START domain
CDDcd088751.18E-69163379No hitNo description
Gene3DG3DSA:3.30.530.201.3E-20168373IPR023393START-like domain
SMARTSM002345.4E-49168378IPR002913START domain
SuperFamilySSF559614.94E-37169380No hitNo description
PfamPF018525.5E-51169376IPR002913START domain
SuperFamilySSF559619.89E-5416500No hitNo description
SuperFamilySSF559619.89E-5528601No hitNo description
PfamPF086701.2E-50705849IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009855Biological Processdetermination of bilateral symmetry
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010072Biological Processprimary shoot apical meristem specification
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 851 aa     Download sequence    Send to blast
MALTMHNKEF ANKQIMDSTK YVRYTPEQVE ALERVYSECP KPSSLRRQQL IRECPILSNI  60
EPKQIKVWFQ NRRCREKQRK EASRLQTVNR KLSAMNKLLM EENDRLQKQV SHLVYENGYM  120
RQQLHSAPAT TTDNSCESVV MSGQHQQQQN PTPQHPQRDA SNPAGLLAVA EETLAEFLSK  180
ATGTAVDWVQ MIGMKPGPDS IGIVAVSRNC SGVAARACGL VSLDPTKIAE ILKDCPSWFR  240
DCRCLDVLSV IPTGNGGTIE LIYMQTYAPT TLAAARDFWL LRYSTSLEDG SLVVCERSLT  300
SSTGGPTGPP PSSFVRAEML ASGFLIRPCE GGGSIIHIVD HVDLDAWSVP EVLRPLYESS  360
KILAQKMTMA AMRHIRQIAQ ETSGEIQYGG GRQPAVLRTF SQRLSRGFND AINGFLDDGW  420
SLLSSDGGED VTVAINSSPN KFLGSQYNWS MLPAFGGVLC AKASMLLQNV PPALLVRFLR  480
EHRSEWADYG VDAYSAACLK ASPYAVPCAR PGGFPSSHVI LPLAHTVEHE EFLEVVRLEG  540
HAFSPEDVAL ARDMYLLQLC SGIDENTVGA CAQLVFAPID ESFADDAPLL ASGFRVIPLD  600
SKAAMQDGPA ASRTLDLASA LEVGSGGARP AGGTELSNYN SRSVLTIAFQ FTFENHMRDN  660
VAAMARQYVR SVVGSVQRVA MAISPSRLGP HAGPKALPGS PEALTLARWI SRSYRIHTGG  720
ELLRADSLTG DALLKQLWHH SDAIMCCSLK TNASPVFTFA NQAGLDMLET TLVALQDIML  780
DKILDEAGRK ILCTEFAKIM QQGFAYLPGG MCVSSMGRAV SYEQAVAWKV LDDDDSNHCL  840
AFMFMNWSFV *
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006468303.10.0homeobox-leucine zipper protein ATHB-14 isoform X2
SwissprotQ6AST10.0HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32
TrEMBLA0A067GIY10.0A0A067GIY1_CITSI; Uncharacterized protein
STRINGXP_006468302.10.0(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34710.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Itoh J,Hibara K,Sato Y,Nagato Y
    Developmental role and auxin responsiveness of Class III homeodomain leucine zipper gene family members in rice.
    Plant Physiol., 2008. 147(4): p. 1960-75
    [PMID:18567825]
  3. Li YY, et al.
    Overexpression of OsHox32 Results in Pleiotropic Effects on Plant Type Architecture and Leaf Development in Rice.
    Rice (N Y), 2016. 9(1): p. 46
    [PMID:27624698]