PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g003071m
Common NameCISIN_1g003071mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family HD-ZIP
Protein Properties Length: 851aa    MW: 93719.1 Da    PI: 6.347
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g003071mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.74.7e-192684357
                       --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
           Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                       k  ++t+eq+e+Le+l++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  orange1.1g003071m 26 KYVRYTPEQVEALERLYHECPKPSSMRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 84
                       5679*****************************************************97 PP
2START185.62.6e-581753832205
                        HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEE CS
              START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..gal 91 
                        +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  +++  v+e+l+d++ W ++++++e+++v+ +g  g++
  orange1.1g003071m 175 IAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLDPT-RVAEILKDRPSWYRDCRSVEVVNVLPTGssGTI 265
                        789*******************************************************.8888888888*********************** PP

                        EEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHH CS
              START  92 qlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphw 179
                        +l +++l+a+++l+p Rdf+ +Ry+  l++g++v++++S++++q+ p+    +++vRae+lpSg+li+p+++g+s +++v+h+dl+ +++++
  orange1.1g003071m 266 ELLYMQLYAPTTLAPaRDFWLLRYTSVLEDGSLVVCERSLNNTQNGPSmpqAPHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPE 357
                        ***********************************************99999**************************************** PP

                        HHHHHHHHHHHHHHHHHHHHTXXXXX CS
              START 180 llrslvksglaegaktwvatlqrqce 205
                        +lr+l++s++  ++kt++a+l+++++
  orange1.1g003071m 358 VLRPLYESSTLIAQKTTMAALRHLRQ 383
                        *********************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.5972185IPR001356Homeobox domain
SMARTSM003895.3E-162389IPR001356Homeobox domain
SuperFamilySSF466893.64E-172589IPR009057Homeodomain-like
CDDcd000865.77E-172686No hitNo description
PfamPF000461.1E-162784IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.0E-182884IPR009057Homeodomain-like
CDDcd146861.17E-678117No hitNo description
PROSITE profilePS5084828.083165393IPR002913START domain
CDDcd088753.74E-82169384No hitNo description
SMARTSM002344.0E-42174384IPR002913START domain
SuperFamilySSF559612.06E-39174386No hitNo description
Gene3DG3DSA:3.30.530.205.8E-25174380IPR023393START-like domain
PfamPF018527.1E-56175383IPR002913START domain
PfamPF086701.8E-52709849IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009733Biological Processresponse to auxin
GO:0010067Biological Processprocambium histogenesis
GO:0010072Biological Processprimary shoot apical meristem specification
GO:0010089Biological Processxylem development
GO:0045597Biological Processpositive regulation of cell differentiation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 851 aa     Download sequence    Send to blast
MMAVSSGGSR DSRDSGGQKM IMDNGKYVRY TPEQVEALER LYHECPKPSS MRRQQLIREC  60
PILSNIEPKQ IKVWFQNRRC REKQRKEASR LQAVNRKLTA MNKLLMEEND RLQKQVSQLV  120
YENTFFRQQT QNAATLATTD TSCESVVTSG QHHLTPQQQH QHPPRDASPA GLLSIAEETL  180
TEFLSKATGT AVEWVQMPGM KPGPDSIGIV AISHGCTGVA ARACGLVGLD PTRVAEILKD  240
RPSWYRDCRS VEVVNVLPTG SSGTIELLYM QLYAPTTLAP ARDFWLLRYT SVLEDGSLVV  300
CERSLNNTQN GPSMPQAPHF VRAEMLPSGY LIRPCEGGGS IIHIVDHMDL EPWSVPEVLR  360
PLYESSTLIA QKTTMAALRH LRQISQEVSQ PSVTGWGRRP AALRALSQRL SRGFNEALNG  420
FTDEGWSMLE SDGIDDVTVH VNSSPSKMMG VQLSYVNGFP SMSNAVLCAK ASMLLQDVPP  480
AILLRFLREH RSEWADSSID AYSAAAVKAG PCSLPVPRAG NFGGQVILPL AHTIEHEEFL  540
EVIKLENMAH YREDMIMPSD IFLLQLCSGV DENAVGNCAE LVFAPIDASF SDDAPIIPSG  600
FRIIPLDSGK DTPSPNRTLD LASALEVGPT GNKASGDSST QCGSTKSVIT IAFQFAFEMH  660
LQENVASMAR QYVRGIIASV QRVALALSPS RFGSNAGLRP PPGSPEAHTL ARWICQSYRC  720
YLGAELLKCE GNESILKTLW HHSDAVLCCS LKALPVFTFA NQAGLDMLET TLVALQDITL  780
EKIFDDSGRK TLCSEFPQIM QQGFMCLQSG ICLSSMGRPI SYERAVAWKV LNEEENAHCI  840
CFMFINWSFV *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.62060.0flower| fruit
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in the procambial cells and the developing vascular system of embryos, roots and shoots. Expressed during the early stages of revascularization after cutting experiment. {ECO:0000269|PubMed:12447534, ECO:0000269|PubMed:8575317}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of vascular development. May promote differentiation of precambial and cambial cells. {ECO:0000269|PubMed:11402194, ECO:0000269|PubMed:15598805}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165. {ECO:0000269|PubMed:17237362, ECO:0000269|PubMed:8575317}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ5022390.0FJ502239.1 Poncirus trifoliata class III HD-Zip protein 8 (ATHB8) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006450706.10.0homeobox-leucine zipper protein ATHB-8
RefseqXP_024033889.10.0homeobox-leucine zipper protein ATHB-8
SwissprotQ391230.0ATHB8_ARATH; Homeobox-leucine zipper protein ATHB-8
TrEMBLA0A067GWM40.0A0A067GWM4_CITSI; Uncharacterized protein
TrEMBLV4UNG00.0V4UNG0_9ROSI; Uncharacterized protein
STRINGXP_006450706.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20222678
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32880.10.0homeobox gene 8
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Hategan L,Godza B,Kozma-Bognar L,Bishop GJ,Szekeres M
    Differential expression of the brassinosteroid receptor-encoding BRI1 gene in Arabidopsis.
    Planta, 2014. 239(5): p. 989-1001
    [PMID:24488524]
  3. Baima S, et al.
    Negative feedback regulation of auxin signaling by ATHB8/ACL5-BUD2 transcription module.
    Mol Plant, 2014. 7(6): p. 1006-1025
    [PMID:24777988]
  4. Kakehi J, et al.
    Mutations in ribosomal proteins, RPL4 and RACK1, suppress the phenotype of a thermospermine-deficient mutant of Arabidopsis thaliana.
    PLoS ONE, 2015. 10(1): p. e0117309
    [PMID:25625317]
  5. Jia X, et al.
    Functional plasticity of miR165/166 in plant development revealed by small tandem target mimic.
    Plant Sci., 2015. 233: p. 11-21
    [PMID:25711809]
  6. Liu S, et al.
    Expression of wild-type PtrIAA14.1, a poplar Aux/IAA gene causes morphological changes in Arabidopsis.
    Front Plant Sci, 2015. 6: p. 388
    [PMID:26082787]
  7. Yamaguchi YL, et al.
    Root-Knot and Cyst Nematodes Activate Procambium-Associated Genes in Arabidopsis Roots.
    Front Plant Sci, 2017. 8: p. 1195
    [PMID:28747918]
  8. Yamazaki K, et al.
    Suppression of DELLA signaling induces procambial cell formation in culture.
    Plant J., 2018. 94(1): p. 48-59
    [PMID:29383774]