PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g003069m | ||||||||
Common Name | CISIN_1g003069mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 852aa MW: 93186.4 Da PI: 6.4643 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.8 | 1.8e-18 | 20 | 78 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le+++ ++++ps +r++L +++ +++ +q+kvWFqNrR +ek+ orange1.1g003069m 20 KYVRYTPEQVEALERVYSECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 78 6789*****************************************************97 PP | |||||||
2 | START | 170.3 | 1.3e-53 | 169 | 376 | 2 | 204 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEE CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..gal 91 +aee+++e+++ka+ ++ Wv++ +++g++++ +++ s+++sg a+ra+g+v +++ +e+l+d + W ++++ ++l vi +g g++ orange1.1g003069m 169 VAEETLAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAVSRNCSGVAARACGLVSLDPT-KIAEILKDCPSWFRDCRCLDVLSVIPTGngGTI 259 6899******************************************************.8999999999*********************** PP EEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHH CS START 92 qlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphw 179 +l++++++a+++l++ Rdf+ +Ry+ +l++g++v++++S++s + p+ ss+vRae+l Sg+li+p+++g+s +++v+hvdl+++++++ orange1.1g003069m 260 ELIYMQTYAPTTLAAaRDFWLLRYSTSLEDGSLVVCERSLTSSTGGPTgppPSSFVRAEMLASGFLIRPCEGGGSIIHIVDHVDLDAWSVPE 351 ******************************************99999888899*************************************** PP HHHHHHHHHHHHHHHHHHHHTXXXX CS START 180 llrslvksglaegaktwvatlqrqc 204 +lr+l++s+ + ++k+++a++++ + orange1.1g003069m 352 VLRPLYESSKILAQKMTMAAMRHIR 376 ********************99765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 15.337 | 15 | 79 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.8E-15 | 17 | 83 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.01E-16 | 20 | 82 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 3.01E-16 | 20 | 80 | No hit | No description |
Pfam | PF00046 | 4.7E-16 | 20 | 78 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-18 | 22 | 78 | IPR009057 | Homeodomain-like |
CDD | cd14686 | 2.39E-6 | 72 | 111 | No hit | No description |
PROSITE profile | PS50848 | 25.265 | 159 | 387 | IPR002913 | START domain |
CDD | cd08875 | 1.15E-69 | 163 | 379 | No hit | No description |
Gene3D | G3DSA:3.30.530.20 | 1.3E-20 | 168 | 373 | IPR023393 | START-like domain |
SMART | SM00234 | 5.4E-49 | 168 | 378 | IPR002913 | START domain |
SuperFamily | SSF55961 | 4.94E-37 | 169 | 380 | No hit | No description |
Pfam | PF01852 | 5.5E-51 | 169 | 376 | IPR002913 | START domain |
SuperFamily | SSF55961 | 4.81E-5 | 416 | 500 | No hit | No description |
SuperFamily | SSF55961 | 4.81E-5 | 528 | 610 | No hit | No description |
Pfam | PF08670 | 1.2E-50 | 706 | 850 | IPR013978 | MEKHLA |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009855 | Biological Process | determination of bilateral symmetry | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:0010072 | Biological Process | primary shoot apical meristem specification | ||||
GO:0080060 | Biological Process | integument development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 852 aa Download sequence Send to blast |
MALTMHNKEF ANKQIMDSTK YVRYTPEQVE ALERVYSECP KPSSLRRQQL IRECPILSNI 60 EPKQIKVWFQ NRRCREKQRK EASRLQTVNR KLSAMNKLLM EENDRLQKQV SHLVYENGYM 120 RQQLHSAPAT TTDNSCESVV MSGQHQQQQN PTPQHPQRDA SNPAGLLAVA EETLAEFLSK 180 ATGTAVDWVQ MIGMKPGPDS IGIVAVSRNC SGVAARACGL VSLDPTKIAE ILKDCPSWFR 240 DCRCLDVLSV IPTGNGGTIE LIYMQTYAPT TLAAARDFWL LRYSTSLEDG SLVVCERSLT 300 SSTGGPTGPP PSSFVRAEML ASGFLIRPCE GGGSIIHIVD HVDLDAWSVP EVLRPLYESS 360 KILAQKMTMA AMRHIRQIAQ ETSGEIQYGG GRQPAVLRTF SQRLSRGFND AINGFLDDGW 420 SLLSSDGGED VTVAINSSPN KFLGSQYNWS MLPAFGGVLC AKASMLLQNV PPALLVRFLR 480 EHRSEWADYG VDAYSAACLK ASPYAVPCAR PGGFPSSHVI LPLAHTVEHE EFLEVVRLEG 540 HAFSPEDVAL ARDMYLLQLC SGIDENTVGA CAQLVFAPID ESFADDAPLL ASGFRVIPLD 600 SKAAMQQDGP AASRTLDLAS ALEVGSGGAR PAGGTELSNY NSRSVLTIAF QFTFENHMRD 660 NVAAMARQYV RSVVGSVQRV AMAISPSRLG PHAGPKALPG SPEALTLARW ISRSYRIHTG 720 GELLRADSLT GDALLKQLWH HSDAIMCCSL KTNASPVFTF ANQAGLDMLE TTLVALQDIM 780 LDKILDEAGR KILCTEFAKI MQQGFAYLPG GMCVSSMGRA VSYEQAVAWK VLDDDDSNHC 840 LAFMFMNWSF V* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaf sheaths and blades and panicles. {ECO:0000269|PubMed:17999151}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006468302.1 | 0.0 | homeobox-leucine zipper protein ATHB-14 isoform X1 | ||||
Swissprot | Q6AST1 | 0.0 | HOX32_ORYSJ; Homeobox-leucine zipper protein HOX32 | ||||
TrEMBL | A0A067G9I5 | 0.0 | A0A067G9I5_CITSI; Uncharacterized protein | ||||
STRING | XP_006468302.1 | 0.0 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4256 | 26 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34710.1 | 0.0 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g003069m |
Publications ? help Back to Top | |||
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