PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g002916m
Common NameCISIN_1g002868mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family SBP
Protein Properties Length: 866aa    MW: 96279.7 Da    PI: 8.1672
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g002916mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP83.62.7e-261532678
                       HHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                SBP 26 vhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78
                       +hska+++lv +++qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++
  orange1.1g002916m  1 MHSKATKALVGNVMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTHP 53
                       69************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031101.5E-17150IPR004333Transcription factor, SBP-box
Gene3DG3DSA:4.10.1100.101.1E-15138IPR004333Transcription factor, SBP-box
SuperFamilySSF1036124.05E-23156IPR004333Transcription factor, SBP-box
PROSITE profilePS5114121.999151IPR004333Transcription factor, SBP-box
SuperFamilySSF484032.49E-7631745IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.4E-6633746IPR020683Ankyrin repeat-containing domain
CDDcd002044.47E-8634745No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 866 aa     Download sequence    Send to blast
MHSKATKALV GNVMQRFCQQ CSRFHVLQEF DEGKRSCRRR LAGHNKRRRK THPDNVVNGG  60
SLNDERSSSY LLISLLRILS NMHSNNSDQT KDQDLLSHLF RNLAGVVGTS NVRNLSGLLQ  120
GSQGLLNAGP SNGNVEKVPD LVSTGPEPSR PSTSACMTDN RIGFSEPMRS VGQCGTVPAS  180
DLLQKKISTN DAHSGRVQAL SASQSIEMFP SRSSFSAKAN EPEATFGRSK MSNIDLNNVY  240
DDSQERVEHL ELSHAPVNPG PVSLYSPLWL HPGSNKSSPP QASANSDSTS SQSQSSSSGE  300
AQSRTDRIVF KLFGKDPNDF PLVLRRQILD WLSHSPTDIE SYIRPGCIVL TIYLRLGKPT  360
WEELCCDLGS SLRRLLEGSD DLFWRTGWLY ARVQHSVAFI YNGQVVLDTP LLLKSHKSCR  420
ISSIKPIAVP VSERVKFVVK GFNLSRSTTR LLCAIEGSYL VQETCYDLMG GADTVNENDE  480
LQCLSFPCSI PNVFGRGFIE VEDHGLSSSF VPFIVAEQEV CSEICMLESA IEAAEISDDF  540
QKIAEKTEVK NQALDFLHEM GWLLHRSHLK FRVGHLHPNF YFFPFKRFKW LLEFSMEHDW  600
CAVVKKLLGI LFDGTVDTGD HTSSELAILE MGLLHKAVRR NCRPMVELLL NYAPDNVLDK  660
PGSRQKQLVD RAGSGFIFKP NVIGPAGLTP LHVAACRDDA ENVLDALTDD PGSVGIEAWK  720
SAQDSTGLTP NDYASLRAHH SYIHLVQRKI NKKSSESGRV ILDIPGSIVD WDSKQKPLKG  780
NKSSRVLSLQ TEKITTKVMQ QQCRLCEQKV AYRNMRSSLV YRPVMLSMVA IAAVCVCVAL  840
LFKSSPEVLY IFRPFRWELL KYGSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A2e-171503584squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14551KRRRKTH
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.55480.0flower| seed
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed constitutively during plant development. {ECO:0000269|PubMed:10524240}.
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' of AP1 promoter. Binds specifically to the 5'-GTAC-3' core sequence. {ECO:0000269|PubMed:10524240, ECO:0000269|PubMed:16095614}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ5674032e-55AJ567403.1 Citrus reticulata microsatellite DNA, clone Ci02B07.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006488746.10.0squamosa promoter-binding-like protein 1 isoform X1
RefseqXP_006488747.10.0squamosa promoter-binding-like protein 1 isoform X1
SwissprotQ9SMX90.0SPL1_ARATH; Squamosa promoter-binding-like protein 1
TrEMBLA0A067FXT90.0A0A067FXT9_CITSI; Uncharacterized protein
STRINGXP_006488745.10.0(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47070.10.0squamosa promoter binding protein-like 1
Publications ? help Back to Top
  1. Jorgensen SA,Preston JC
    Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis.
    Mol. Phylogenet. Evol., 2014. 73: p. 129-39
    [PMID:24508602]
  2. Chao LM, et al.
    Arabidopsis Transcription Factors SPL1 and SPL12 Confer Plant Thermotolerance at Reproductive Stage.
    Mol Plant, 2017. 10(5): p. 735-748
    [PMID:28400323]