PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g002737m
Common NameCISIN_1g002390mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ARF
Protein Properties Length: 887aa    MW: 97730.4 Da    PI: 6.476
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g002737mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.41.3e-23116217199
                        EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                        f+k+lt sd++++g +++p++ ae+        + +++  ++l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   
  orange1.1g002737m 116 FCKTLTASDTSTHGGFSVPRRAAEKVfppldysQTPPA--QELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI-- 203
                        99****************************97544444..48************************************************.. PP

                        SSSEE..EEEEE-S CS
                 B3  86 grsefelvvkvfrk 99 
                        ++++ +l+++++r+
  orange1.1g002737m 204 WNEKNQLLLGIRRA 217
                        8899999****997 PP
2Auxin_resp121.75.5e-40242325183
         Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                        aahaa+t+s F+++YnPras+seFv++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdldpvrWpnS+Wrs+k
  orange1.1g002737m 242 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVK 325
                        79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.15E-48101245IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.4E-42109231IPR015300DNA-binding pseudobarrel domain
CDDcd100171.05E-21115216No hitNo description
PfamPF023629.8E-22116217IPR003340B3 DNA binding domain
PROSITE profilePS5086312.478116218IPR003340B3 DNA binding domain
SMARTSM010195.8E-24116218IPR003340B3 DNA binding domain
PfamPF065077.7E-35242325IPR010525Auxin response factor
SuperFamilySSF542774.25E-8745827No hitNo description
PfamPF023095.7E-7746835IPR033389AUX/IAA domain
PROSITE profilePS5174526.083753837IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 887 aa     Download sequence    Send to blast
MRLATSGFNQ QTQEGEKKCL NSELWHACAG PLVSLPPVGS RVVYFPQGHS EQVAASTNKE  60
VDAHIPNYPN LPPQLICQLH NLTMHADVET DEQEQKDVYL LPAELGAPNK QPTNYFCKTL  120
TASDTSTHGG FSVPRRAAEK VFPPLDYSQT PPAQELIARD LHDNEWKFRH IFRGQPKRHL  180
LTTGWSVFVS AKRLVAGDSV LFIWNEKNQL LLGIRRATRP QTVMPSSVLS SDSMHIGLLA  240
AAAHAAATNS RFTIFYNPRA SPSEFVIPLA KYVKAVYHTR VSVGMRFRML FETEESSVRR  300
YMGTITGISD LDPVRWPNSH WRSVKVGWDE STAGERQPRV SLWEIEPLTT FPMYSSPFPL  360
RLKRPWPSGL PSFHGMKDGD MSINSPLMWL QGGVGDQGIQ SLNFQGYGVT PWMQPRLDAS  420
IPGLQPDVYQ AMAAAALQEM RTVDSSKLAS QSLLQFQQSQ NVSNGTASMI PRQMLQQSQA  480
QNALLQSFQE NQASAQAQLL QQQLQRQHSY NEQRQQQQQV QQSQQLHQLS VQPQISNVIS  540
TLPHLASSSQ SQPPTLQTVA SQCQQSNFSD SLGNPIASSD VSSMHTILGS LSQAGASHLL  600
NSNASNPIIS SSAMLTKQVT VDNHVPSAVS HCILPQVEQL GAQQSNVSEL ASLLPPFPGR  660
EYSSYHGSGD PQNNLLFGVS IDSSLMGQNG LPNLKNISSE NESLSLPYAA SNFTNNVGTD  720
FPLNSDMTTS SCVDESGFLQ SSENVDQVNP PTRTFVKVHK SGSFGRSLDI SKFSSYDELR  780
SELARMFGLE GQLEDPQRSG WQLVFVDREN DVLLLGDDPW QEFVNNVGYI KILSPLEVQQ  840
MGKGLSPVTS GPGQRLSSNN NFDDYVSRQE LRSSSNGVAS MGSINY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1561134641388Auxin response factor 5
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.166360.0callus| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006468969.10.0auxin response factor 6-like
SwissprotA2X1A10.0ARFF_ORYSI; Auxin response factor 6
SwissprotQ6H6V40.0ARFF_ORYSJ; Auxin response factor 6
TrEMBLA0A067F7Q60.0A0A067F7Q6_CITSI; Auxin response factor
STRINGXP_006468969.10.0(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]