PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g002650m
Common NameCISIN_1g002624mg, LOC102620318
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ARF
Protein Properties Length: 897aa    MW: 99097.5 Da    PI: 6.5952
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g002650mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.71.1e-23127228199
                        EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                        f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   
  orange1.1g002650m 127 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI-- 214
                        99*****************************8544444..48************************************************.. PP

                        SSSEE..EEEEE-S CS
                 B3  86 grsefelvvkvfrk 99 
                        ++++ +l+++++r+
  orange1.1g002650m 215 WNDKNQLLLGIRRA 228
                        7888889****997 PP
2Auxin_resp119.91.9e-39253336183
         Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                        aahaa+t+s F+++YnPras+seFv++++k+ ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdldpv+WpnS+Wrs+k
  orange1.1g002650m 253 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYIKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVKWPNSHWRSVK 336
                        79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.53E-48112256IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.0E-41121242IPR015300DNA-binding pseudobarrel domain
CDDcd100171.39E-21126227No hitNo description
SMARTSM010192.8E-24127229IPR003340B3 DNA binding domain
PfamPF023625.2E-22127228IPR003340B3 DNA binding domain
PROSITE profilePS5086312.52127229IPR003340B3 DNA binding domain
PfamPF065072.2E-34253336IPR010525Auxin response factor
SuperFamilySSF542776.54E-7755838No hitNo description
PfamPF023096.2E-7760851IPR033389AUX/IAA domain
PROSITE profilePS5174523.182763847IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0009908Biological Processflower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 897 aa     Download sequence    Send to blast
MRLSTAGFSP QHQEGEKRVL NSELWHACAG PLVSLPAVGS RVVYFPQGHS EQVAASTNKE  60
VDAHIPNYPS LPPQLICQLH NVTMHADIET DEVYAQMTLQ PLSPQEQKEA YLPAELGTLS  120
KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFSQ QPPAQELIAR DLHDNEWKFR  180
HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VLFIWNDKNQ LLLGIRRANR PPTVMPSSVL  240
SSDSMHLGLL AAAAHAAATN SRFTIFYNPR ASPSEFVIPL AKYIKAVYHT RVSVGMRFRM  300
LFETEESSVR RYMGTITGIS DLDPVKWPNS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT  360
TFPMYSSPFP LRLKRPWPVG LPAFHDEDLG INSQLMWLRG DGDRGMQSLN FQGLGVTPWM  420
QPRMDASMLG LQNDMYQAMA AAALREMRAV DPSKPNAASL MQFQQPQNLP SRTSALVQSQ  480
MLQQSHPQQT FLQGVQENQH QSQSQTHSQS HLLQPQLQHS HSFNNQQQQP LPQPQQQVDH  540
QQIPSAVSAM SQFASVSQSQ SPPMQAISSL CQQQSFSDSN GNPATNPIVS PLHSLLGSYA  600
QDESSHLLNL PRSNPLIHSP TWPSKRAAVE PLFSSGAPQC VLPSVEQLGP PHANISQNSI  660
SLPPFPGREC SIDQEGSADP QSHLLFGVNI EPSSLLMQNE MSSLGGVGSN SDSTTIPFAS  720
SNYMSTAGAD FSVNPEIAPS SCIDESGFLQ SPENVGQVNP PNRTFVKVYK SGSFGRSLDI  780
TKFSSYHELR SELARMFGLE GHLEDPLRSG WQLVFVDREN DVLLLGDGPW PEFVNSVWCI  840
KILSPPEVQQ MGKRGNELLN SVPIQRLSNS SCDDYATRQD SRNLSAGITS VGSLDF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1621135741388Auxin response factor 5
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.124450.0fruit| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006468259.10.0auxin response factor 6 isoform X2
SwissprotA2X1A10.0ARFF_ORYSI; Auxin response factor 6
SwissprotQ6H6V40.0ARFF_ORYSJ; Auxin response factor 6
TrEMBLA0A067G6Z10.0A0A067G6Z1_CITSI; Auxin response factor
STRINGXP_006468258.10.0(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]