PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g002626m | ||||||||
Common Name | CISIN_1g002489mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | B3 | ||||||||
Protein Properties | Length: 900aa MW: 98974.8 Da PI: 7.4489 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 43.9 | 4.1e-14 | 359 | 440 | 1 | 79 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDf 79 f+k l+ sd+++ grlvlpkk+ae++ ++++e+ l+++d++g++W +++++ +++s++yvl+ G + +L++gD+ orange1.1g002626m 359 FEKMLSASDAGRIGRLVLPKKCAEAYfpPISQPEGLPLKVQDSKGKEWIFQFRFwpNNNSRMYVLE-GVTPCIQNMQLQAGDI 440 89**************************555566778***************9989999999***9.***************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE pattern | PS01359 | 0 | 32 | 115 | IPR019786 | Zinc finger, PHD-type, conserved site |
Gene3D | G3DSA:2.40.330.10 | 6.0E-24 | 355 | 440 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 4.58E-15 | 356 | 440 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.93E-17 | 357 | 440 | No hit | No description |
SMART | SM01019 | 9.6E-9 | 359 | 448 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.7E-11 | 359 | 440 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS51050 | 13.781 | 578 | 628 | IPR011124 | Zinc finger, CW-type |
Pfam | PF07496 | 8.4E-11 | 583 | 625 | IPR011124 | Zinc finger, CW-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 900 aa Download sequence Send to blast |
MKHKTHPCNP VALSFISVSV FIFNLDLTCL SCNYCYLVLQ ILNIRCFVFC AAILTLILCV 60 YRSIYEEGRF CDTFHVNASG WRCCESCGKR VHCGCITSVH AFTLLDAGGI ECMTCARKNV 120 LVAPTPSWPP SLFYQTPFPE RIKDLSVKNW TQLAGSGPVP WRQAPSLFNS SIPQPELRPR 180 LPYEVDLSAG IDRINASERL SVPSLEKRKL EDFSERLMNG GLKSGSRDIP ENANAGSNCD 240 MQPSSCLNKP QQSSTLKDDS STPHFGLAVS YASPSETNSQ IGVSGSHLRP VVQPPLVKQF 300 HGNLPNGADS LGETQVRNGR PRVDARGRSQ LLPRYWPRFT DQDLQQISGD SNSVITPLFE 360 KMLSASDAGR IGRLVLPKKC AEAYFPPISQ PEGLPLKVQD SKGKEWIFQF RFWPNNNSRM 420 YVLEGVTPCI QNMQLQAGDI GNQPKSQESY EMFSFMWKDN EANKAGTGIP ANGHAELADP 480 SSWSKVDKSG YIATEALGAK SSISRKRKNT TLGSKSKRLK IENEDVIELK LTWEEAQGLL 540 RPPPNNVPSV VVIEGYEFEE YEDAPILGKP TIFATDNVGE KIQWVQCEDC SKWRKVPANA 600 RLPSKWTCSG NLWDPERSVC SVAQELREEQ LEDLIAPNNP ASSKKLKAAK QEPDCVEALE 660 GLDTLANLAI LGEGEGLTAS SQATTKHPRH RPGCSCIVCI QPPSGKGPKH KQTCTCNVCL 720 TVKRRFHTLM LRREKKQSEK DAETSRKKQQ QQKLPVPEKS ADDDPLSCSK TGNNSPNEKK 780 VVSEGSDDDS SRIKSSTSPF KGQIDLNIQP EREEELSPGS DSGSMIRLLQ DATEKYLRQQ 840 RLSSSGVNTS SVDNEGLQGG VTGEKISNGI TLDGSHQDTD EDHHGSLSVK ASASISATG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5yzy_C | 7e-53 | 337 | 439 | 1 | 103 | B3 domain-containing transcription repressor VAL1 |
5yzz_C | 7e-53 | 337 | 439 | 1 | 103 | B3 domain-containing transcription repressor VAL1 |
5z00_C | 7e-53 | 337 | 439 | 1 | 103 | B3 domain-containing transcription repressor VAL1 |
5z00_G | 7e-53 | 337 | 439 | 1 | 103 | B3 domain-containing transcription repressor VAL1 |
5z00_K | 7e-53 | 337 | 439 | 1 | 103 | B3 domain-containing transcription repressor VAL1 |
5z00_M | 7e-53 | 337 | 439 | 1 | 103 | B3 domain-containing transcription repressor VAL1 |
6j9a_A | 8e-53 | 337 | 439 | 2 | 104 | B3 domain-containing transcription repressor VAL1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 505 | 519 | KRKNTTLGSKSKRLK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KR492070 | 3e-67 | KR492070.1 UNVERIFIED: Citrus sinensis clone 114-1c mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006467887.1 | 0.0 | B3 domain-containing protein Os07g0563300 isoform X1 | ||||
Swissprot | Q0D5G4 | 0.0 | Y7633_ORYSJ; B3 domain-containing protein Os07g0563300 | ||||
TrEMBL | A0A067GAU5 | 0.0 | A0A067GAU5_CITSI; Uncharacterized protein | ||||
STRING | XP_006467887.1 | 0.0 | (Citrus sinensis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30470.1 | 1e-151 | high-level expression of sugar-inducible gene 2 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g002626m |