PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g002396m
Common NameCISIN_1g001969mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ARF
Protein Properties Length: 929aa    MW: 102416 Da    PI: 6.9031
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g002396mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B370.91.7e-2271172199
                        EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                        f+k+lt sd++++g +++p++ ae++       + +++  ++l+ +d++ + W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F   
  orange1.1g002396m  71 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfsM-QPPA-QELMARDLHDNIWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFI-- 158
                        99*****************************954.5444.48************************************************.. PP

                        SSSEE..EEEEE-S CS
                 B3  86 grsefelvvkvfrk 99 
                        ++++++l+++++r+
  orange1.1g002396m 159 RDEKQQLLLGIRRA 172
                        5688889****997 PP
2Auxin_resp120.99.5e-40197280183
         Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                        aahaa+++s+F+v+YnPras+seFvv+++k+ ka++ +++s+GmRf+m+fete+s +rr++Gt++g+sdldpvrW+nS+Wr+L+
  orange1.1g002396m 197 AAHAAANNSPFTVFYNPRASPSEFVVPLAKYYKAVHsNQISLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKNSQWRNLQ 280
                        79********************************9889********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.76E-4360200IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.7E-4162186IPR015300DNA-binding pseudobarrel domain
CDDcd100179.88E-1870162No hitNo description
SMARTSM010192.0E-2271173IPR003340B3 DNA binding domain
PROSITE profilePS5086311.78771173IPR003340B3 DNA binding domain
PfamPF023622.8E-2071172IPR003340B3 DNA binding domain
PfamPF065074.2E-35197280IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 929 aa     Download sequence    Send to blast
MKKDIDGQIP NYPNLPSKLL CILLNVTLHA DTETDEVYAQ MTLQPVPSYD REALLRSDLA  60
LKSNKPQTEF FCKTLTASDT STHGGFSVPR RAAEKIFPPL DFSMQPPAQE LMARDLHDNI  120
WTFRHIYRGQ PKRHLLTTGW SLFVSGKRLF AGDSVLFIRD EKQQLLLGIR RANRQPANLS  180
SSVLSSDSMH IGILAAAAHA AANNSPFTVF YNPRASPSEF VVPLAKYYKA VHSNQISLGM  240
RFRMMFETEE SGTRRYMGTI TGISDLDPVR WKNSQWRNLQ VGWDESTAGE KRNRVSIWEI  300
EPVTAPFFIC PPPFFRSKHP RQADDDASDL DNVFKRTMPW IGDDFGVKDS QSLPGLSLVQ  360
WMNMQQNPSL ANAMQSSYMH SLPGSILQNL NGGLSQMPQQ NNLQYTGQSL PQQVPQIDQL  420
AKLPSTVNPL GSNILPQQPL GDISQQSRQN MITQNLPSGP VQAQVLQPQN LVQTSNILQQ  480
QPSIQNPQLP ANLPQNLQQQ QQQQHIMGQN QQQNLMQTQL PDPINQNLQM SDKQIQLHLL  540
QKLQQQRQSL LSQQSALQQP AQLIQLQDQQ RQLLDASQSF SRSGTPTQML EMHQVTPTSL  600
PQSNIMSQQI ANSGSLNNVQ FSQPPQQPKL EQQQPGILPQ MPGHMGLPAS HIINPVSTAG  660
NSALTGAAGV GQSVITDDNP SCSTSPSTNN CQRLIQPTIN SRTHRSAGIG EEVAQSASAL  720
LNPSALETMP SNANLVKDLP HKSDVKPSVN ISKTQNQGFF TPQTYLNGAA TQTDYLDTSS  780
STTSVCLSQN DVHLQQNNSL SYNPQSTLRD ASQDGEVPVD PRSNIPYGAN IDGPLGSMNP  840
DPLLTKGMMG LGKDFSNNIS SGAMLANYEN SKDAQQELSS SIVSQSFGVP DMAFNSIDST  900
INDSSFLNGG PWAPPPQFPQ RMRTYTKV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-148230189388Auxin response factor 5
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by auxin under light condition. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006453190.20.0LOW QUALITY PROTEIN: auxin response factor 19
RefseqXP_006474325.20.0LOW QUALITY PROTEIN: auxin response factor 19-like
SwissprotQ6Z2W30.0ARFE_ORYSJ; Auxin response factor 5
TrEMBLA0A067FFL50.0A0A067FFL5_CITSI; Auxin response factor
STRINGXP_006474325.10.0(Citrus sinensis)
STRINGXP_006453190.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19