PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g002390m
Common NameCISIN_1g002390mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ARF
Protein Properties Length: 929aa    MW: 102596 Da    PI: 6.5109
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g002390mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B374.31.4e-23158259199
                        EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                        f+k+lt sd++++g +++p++ ae+        + +++  ++l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   
  orange1.1g002390m 158 FCKTLTASDTSTHGGFSVPRRAAEKVfppldysQTPPA--QELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI-- 245
                        99****************************97544444..48************************************************.. PP

                        SSSEE..EEEEE-S CS
                 B3  86 grsefelvvkvfrk 99 
                        ++++ +l+++++r+
  orange1.1g002390m 246 WNEKNQLLLGIRRA 259
                        8899999****997 PP
2Auxin_resp121.65.9e-40284367183
         Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                        aahaa+t+s F+++YnPras+seFv++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdldpvrWpnS+Wrs+k
  orange1.1g002390m 284 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVK 367
                        79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.23E-48143287IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.8E-42151273IPR015300DNA-binding pseudobarrel domain
CDDcd100171.14E-21157258No hitNo description
PfamPF023621.0E-21158259IPR003340B3 DNA binding domain
SMARTSM010195.8E-24158260IPR003340B3 DNA binding domain
PROSITE profilePS5086312.478158260IPR003340B3 DNA binding domain
PfamPF065078.2E-35284367IPR010525Auxin response factor
SuperFamilySSF542774.58E-8787869No hitNo description
PfamPF023096.1E-7788877IPR033389AUX/IAA domain
PROSITE profilePS5174526.083795879IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 929 aa     Download sequence    Send to blast
MNFIHSNPVL LGIPYKLDQI VLNFVLFFSL VMMLDNTKCR ENFAGEKKCL NSELWHACAG  60
PLVSLPPVGS RVVYFPQGHS EQVAASTNKE VDAHIPNYPN LPPQLICQLH NLTMHADVET  120
DEVYAQMTLQ PLSPQEQKDV YLLPAELGAP NKQPTNYFCK TLTASDTSTH GGFSVPRRAA  180
EKVFPPLDYS QTPPAQELIA RDLHDNEWKF RHIFRGQPKR HLLTTGWSVF VSAKRLVAGD  240
SVLFIWNEKN QLLLGIRRAT RPQTVMPSSV LSSDSMHIGL LAAAAHAAAT NSRFTIFYNP  300
RASPSEFVIP LAKYVKAVYH TRVSVGMRFR MLFETEESSV RRYMGTITGI SDLDPVRWPN  360
SHWRSVKVGW DESTAGERQP RVSLWEIEPL TTFPMYSSPF PLRLKRPWPS GLPSFHGMKD  420
GDMSINSPLM WLQGGVGDQG IQSLNFQGYG VTPWMQPRLD ASIPGLQPDV YQAMAAAALQ  480
EMRTVDSSKL ASQSLLQFQQ SQNVSNGTAS MIPRQMLQQS QAQNALLQSF QENQASAQAQ  540
LLQQQLQRQH SYNEQRQQQQ QVQQSQQLHQ LSVQPQISNV ISTLPHLASS SQSQPPTLQT  600
VASQCQQSNF SDSLGNPIAS SDVSSMHTIL GSLSQAGASH LLNSNASNPI ISSSAMLTKQ  660
VTVDNHVPSA VSHCILPQVE QLGAQQSNVS ELASLLPPFP GREYSSYHGS GDPQNNLLFG  720
VSIDSSLMGQ NGLPNLKNIS SENESLSLPY AASNFTNNVG TDFPLNSDMT TSSCVDESGF  780
LQSSENVDQV NPPTRTFVKV HKSGSFGRSL DISKFSSYDE LRSELARMFG LEGQLEDPQR  840
SGWQLVFVDR ENDVLLLGDD PWQEFVNNVG YIKILSPLEV QQMGKGLSPV TSGPGQRLSS  900
NNNFDDYVSR QELRSSSNGV ASMGSINY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1643338833388Auxin response factor 5
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.166360.0callus| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006468969.10.0auxin response factor 6-like
SwissprotA2X1A10.0ARFF_ORYSI; Auxin response factor 6
SwissprotQ6H6V40.0ARFF_ORYSJ; Auxin response factor 6
TrEMBLA0A067FJQ50.0A0A067FJQ5_CITSI; Auxin response factor
STRINGXP_006468969.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13442894
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.20.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]