PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g002116m
Common NameCISIN_1g001728mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ARF
Protein Properties Length: 965aa    MW: 108195 Da    PI: 7.4487
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g002116mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.55.2e-2370171199
                        EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                        f+k+lt sd++++g +++p++ ae++       + +++  ++++ +d++  +W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F   
  orange1.1g002116m  70 FCKTLTASDTSTHGGFSVPRRAAEKIfppldysM-QPPA-QEIVARDLHDTTWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFI-- 157
                        99*****************************954.5444.38************************************************.. PP

                        SSSEE..EEEEE-S CS
                 B3  86 grsefelvvkvfrk 99 
                        ++++ +l+++++r+
  orange1.1g002116m 158 RDEKSQLLLGIRRA 171
                        45677789999997 PP

2Auxin_resp123.61.3e-40196278183
         Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                        aahaa+++s+F+++YnPras+seFv++++k++ka++++vs+GmRf+m+fete+s  rr++Gt++++sdldp+rW+nS+Wr+L+
  orange1.1g002116m 196 AAHAAANNSPFTIFYNPRASPSEFVIPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITSISDLDPLRWKNSQWRNLQ 278
                        79*******************************************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019369.68E-4560199IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.1E-4262185IPR015300DNA-binding pseudobarrel domain
CDDcd100172.53E-2069170No hitNo description
PROSITE profilePS5086312.42170172IPR003340B3 DNA binding domain
PfamPF023626.2E-2170171IPR003340B3 DNA binding domain
SMARTSM010193.7E-2470172IPR003340B3 DNA binding domain
PfamPF065071.8E-35196278IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0009734Biological Processauxin-activated signaling pathway
GO:0010311Biological Processlateral root formation
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 965 aa     Download sequence    Send to blast
MQKENDFIPN YPNLPSKLIC MLHSVTLHAD PETDEVYAQM TLQPVNKYEK EAILASDMGL  60
KQNRQPTEFF CKTLTASDTS THGGFSVPRR AAEKIFPPLD YSMQPPAQEI VARDLHDTTW  120
TFRHIYRGQP KRHLLTTGWS VFVSTKRLFA GDSVLFIRDE KSQLLLGIRR ANRQQPALSS  180
SVISSDSMHI GILAAAAHAA ANNSPFTIFY NPRASPSEFV IPLAKYNKAM YTQVSLGMRF  240
RMMFETEESG VRRYMGTITS ISDLDPLRWK NSQWRNLQVG WDESTAGERP SRVSLWETEP  300
VVTPFYICPP PFFRPKFPKQ PGMPDDESDI ENAFKRAMPW LGDDFGMKDA TSSIFPGLSL  360
VQWMSMQQNN QFPAAQSGFF PSMVSSTGLH SNFGTDDPSK LLNFQASALA APNLQFSKAN  420
PQNQVNQLPQ SPIAWTQQQQ LQHLLQNPLN QQQQQHPQLH QQRQQQQQLL HPQQSQQQQQ  480
QQQNHHHHNQ QPPPPPQLQP SPTPPHSQSQ SQSPVPQRPQ QQPQQQQQQP QQQIFLPTHV  540
NNGVLVPNAN QNVQQPTVYS QLQQPQLLTS NTQAPQGILS NNKNSYQLTS LPQDSQFQQQ  600
MEQSTGPLQR QQQQSQLQQS SLQFLQQSLA QRAQQQPQVQ QLAQQSMSDQ QLQSQLQQKL  660
QQQQQQQLLS PAGSLLQPQL LQQQLAHQQN QQLSQLPPSQ NHQQQLSNNL SASVLVQPQQ  720
LPMNQPQNQN RPLTGTRAHS NHTDGDAPSC STSPSSNNCQ ISPSNFLNRN QQGPAMLMGD  780
SVVEPSSNLV QELHSKSDAR IKHELPISKG PEHLKYNGSM TDQVEASSSG TSYCLDPGNI  840
QQNFSLPTYC LDGDTQSHPR NSLPFVANID GMAPDTLLSR GYDSQKDLHN LLSNYGGTPR  900
DIETELSTAA ISSQSFAVPN IPFKPACSNE VGINEAGVLG NGLWANQTQR MRTFTKVCYA  960
IYSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-150829996388Auxin response factor 5
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024034120.10.0auxin response factor 19 isoform X2
TrEMBLA0A067G2L50.0A0A067G2L5_CITSI; Auxin response factor
TrEMBLA0A067G5F90.0A0A067G5F9_CITSI; Auxin response factor
STRINGXP_006452860.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19