PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g002116m | ||||||||
Common Name | CISIN_1g001728mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | ARF | ||||||||
Protein Properties | Length: 965aa MW: 108195 Da PI: 7.4487 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 72.5 | 5.2e-23 | 70 | 171 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 f+k+lt sd++++g +++p++ ae++ + +++ ++++ +d++ +W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F orange1.1g002116m 70 FCKTLTASDTSTHGGFSVPRRAAEKIfppldysM-QPPA-QEIVARDLHDTTWTFRHIYRGQPKRHLLTTGWSVFVSTKRLFAGDSVLFI-- 157 99*****************************954.5444.38************************************************.. PP SSSEE..EEEEE-S CS B3 86 grsefelvvkvfrk 99 ++++ +l+++++r+ orange1.1g002116m 158 RDEKSQLLLGIRRA 171 45677789999997 PP | |||||||
2 | Auxin_resp | 123.6 | 1.3e-40 | 196 | 278 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+++YnPras+seFv++++k++ka++++vs+GmRf+m+fete+s rr++Gt++++sdldp+rW+nS+Wr+L+ orange1.1g002116m 196 AAHAAANNSPFTIFYNPRASPSEFVIPLAKYNKAMYTQVSLGMRFRMMFETEESGVRRYMGTITSISDLDPLRWKNSQWRNLQ 278 79*******************************************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 9.68E-45 | 60 | 199 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 1.1E-42 | 62 | 185 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 2.53E-20 | 69 | 170 | No hit | No description |
PROSITE profile | PS50863 | 12.421 | 70 | 172 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 6.2E-21 | 70 | 171 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 3.7E-24 | 70 | 172 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.8E-35 | 196 | 278 | IPR010525 | Auxin response factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0010311 | Biological Process | lateral root formation | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 965 aa Download sequence Send to blast |
MQKENDFIPN YPNLPSKLIC MLHSVTLHAD PETDEVYAQM TLQPVNKYEK EAILASDMGL 60 KQNRQPTEFF CKTLTASDTS THGGFSVPRR AAEKIFPPLD YSMQPPAQEI VARDLHDTTW 120 TFRHIYRGQP KRHLLTTGWS VFVSTKRLFA GDSVLFIRDE KSQLLLGIRR ANRQQPALSS 180 SVISSDSMHI GILAAAAHAA ANNSPFTIFY NPRASPSEFV IPLAKYNKAM YTQVSLGMRF 240 RMMFETEESG VRRYMGTITS ISDLDPLRWK NSQWRNLQVG WDESTAGERP SRVSLWETEP 300 VVTPFYICPP PFFRPKFPKQ PGMPDDESDI ENAFKRAMPW LGDDFGMKDA TSSIFPGLSL 360 VQWMSMQQNN QFPAAQSGFF PSMVSSTGLH SNFGTDDPSK LLNFQASALA APNLQFSKAN 420 PQNQVNQLPQ SPIAWTQQQQ LQHLLQNPLN QQQQQHPQLH QQRQQQQQLL HPQQSQQQQQ 480 QQQNHHHHNQ QPPPPPQLQP SPTPPHSQSQ SQSPVPQRPQ QQPQQQQQQP QQQIFLPTHV 540 NNGVLVPNAN QNVQQPTVYS QLQQPQLLTS NTQAPQGILS NNKNSYQLTS LPQDSQFQQQ 600 MEQSTGPLQR QQQQSQLQQS SLQFLQQSLA QRAQQQPQVQ QLAQQSMSDQ QLQSQLQQKL 660 QQQQQQQLLS PAGSLLQPQL LQQQLAHQQN QQLSQLPPSQ NHQQQLSNNL SASVLVQPQQ 720 LPMNQPQNQN RPLTGTRAHS NHTDGDAPSC STSPSSNNCQ ISPSNFLNRN QQGPAMLMGD 780 SVVEPSSNLV QELHSKSDAR IKHELPISKG PEHLKYNGSM TDQVEASSSG TSYCLDPGNI 840 QQNFSLPTYC LDGDTQSHPR NSLPFVANID GMAPDTLLSR GYDSQKDLHN LLSNYGGTPR 900 DIETELSTAA ISSQSFAVPN IPFKPACSNE VGINEAGVLG NGLWANQTQR MRTFTKVCYA 960 IYSL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-150 | 8 | 299 | 96 | 388 | Auxin response factor 5 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024034120.1 | 0.0 | auxin response factor 19 isoform X2 | ||||
TrEMBL | A0A067G2L5 | 0.0 | A0A067G2L5_CITSI; Auxin response factor | ||||
TrEMBL | A0A067G5F9 | 0.0 | A0A067G5F9_CITSI; Auxin response factor | ||||
STRING | XP_006452860.1 | 0.0 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19220.1 | 0.0 | auxin response factor 19 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g002116m |