PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g002062m
Common NameCISIN_1g002062mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family FAR1
Protein Properties Length: 974aa    MW: 109937 Da    PI: 6.6148
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g002062mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR180.62.7e-25211295289
               FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89 
                        fY +YAk++GFsvrk+k ++   ng i kr f+Cs++g+r++++++ + ++ +r+etrtgC+a+++ + e +gkw+++ +  eHnH+l
  orange1.1g002062m 211 FYTTYAKRIGFSVRKAKVRRL-SNGAIRKRLFYCSRQGFRAKKQST-KATKYQRKETRTGCDAMVEFTVE-NGKWMISGFTPEHNHDL 295
                        9****************9998.8899****************9999.99999*****************9.***************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031019.3E-23211295IPR004330FAR1 DNA binding domain
PfamPF105514.4E-21407501IPR018289MULE transposase domain
PROSITE profilePS509669.359685723IPR007527Zinc finger, SWIM-type
PfamPF044341.3E-5694723IPR007527Zinc finger, SWIM-type
SMARTSM005754.7E-7698725IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 974 aa     Download sequence    Send to blast
MDEMNDSVSS NPEQFLNDGE RLFNGIAADS NENQGGHDPH PFWKFEAQEG TSTSMLDLDW  60
CWPDEISRPG GHTNNHNSSD CWSAASEAHC LNNNFLPAAA AAAASDAVFP PLLNVVTDGA  120
ENADAAVMKR QLQNTEKPLE MAHNSLQHLP SFDTHIVSLE SDGESLMSSE SNGDEIQSQS  180
TVNLRGEIPE VNSQNPELGM VFSSQEEAYM FYTTYAKRIG FSVRKAKVRR LSNGAIRKRL  240
FYCSRQGFRA KKQSTKATKY QRKETRTGCD AMVEFTVENG KWMISGFTPE HNHDLEGKSK  300
PVVGSSTKVS EDHSISTTMN KAATVKEAQP LNSVGFQGIN CPGIPCDEKT SCPKLLDGQS  360
LIKYFRRLEM EAPSFSYTVQ VNAENCLTGF FWTDGRSRID YDYFGDVVIL DTTFRIEANN  420
MIYAPFLGLN HHRQYVLFGG AFLLDDSKDS FIWLLRTFLD SMGRRQPSTI FTDGYQAMAD  480
AIKMVLPKTQ HLLGIWYILR NAKANLSKCY GEPGFNSLFN KCIFDCESEA EFESMWESLL  540
EQYELCANPW LKTQYMLRRK WAHCFCKSAF SAGIRSTQHC YDISHVFHSL TSKATTPLQF  600
VQQYFKVAEQ QRREELYEDF RCNGSAPPTI LRSNAIEKEA AKIYSCTMFK LFRAELLECL  660
SVAIEEIQGD GMTAKFRLNE EGQKKEKIVE FNCVETHLTC SCKKYESVGI LCVHALKVLN  720
AKNIFHIPPQ YILKRWTKSA KDGMVVNGHE GEVVDDSQRH LHLDESKLMH KALNVITKSL  780
PFEGTRMIAD DYLSIALKNI EDALRTKNIG QLNTRDVYDA YKDAAAAADA NGIISVETQR  840
MESNPSTVNQ QEALNYRIKC QLKRKYDNDG RETKSKSSDG AITHCHSFKE VTKGGDYQGS  900
KKHASRSYSV GENSRHSACV SALPPLPSQS TGNQFKDHNK SRLNVQVRLE ETEKERERLE  960
EIEKEIKSWF QPM*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006482039.10.0protein FAR1-RELATED SEQUENCE 7-like
RefseqXP_006482040.10.0protein FAR1-RELATED SEQUENCE 7-like
RefseqXP_015387023.10.0protein FAR1-RELATED SEQUENCE 7-like
TrEMBLA0A067EER90.0A0A067EER9_CITSI; Uncharacterized protein
STRINGXP_006482039.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1917167
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-102FAR1-related sequence 5