PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g001969m | ||||||||
Common Name | CISIN_1g001969mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | ARF | ||||||||
Protein Properties | Length: 990aa MW: 108488 Da PI: 6.8871 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 70.7 | 1.8e-22 | 132 | 233 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 f+k+lt sd++++g +++p++ ae++ + +++ ++l+ +d++ + W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F orange1.1g001969m 132 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfsM-QPPA-QELMARDLHDNIWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFI-- 219 99*****************************954.5444.48************************************************.. PP SSSEE..EEEEE-S CS B3 86 grsefelvvkvfrk 99 ++++++l+++++r+ orange1.1g001969m 220 RDEKQQLLLGIRRA 233 5688889****997 PP | |||||||
2 | Auxin_resp | 120.8 | 1e-39 | 258 | 341 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+++s+F+v+YnPras+seFvv+++k+ ka++ +++s+GmRf+m+fete+s +rr++Gt++g+sdldpvrW+nS+Wr+L+ orange1.1g001969m 258 AAHAAANNSPFTVFYNPRASPSEFVVPLAKYYKAVHsNQISLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKNSQWRNLQ 341 79********************************9889********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 6.28E-43 | 121 | 261 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 7.4E-41 | 123 | 247 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.09E-17 | 131 | 223 | No hit | No description |
SMART | SM01019 | 2.0E-22 | 132 | 234 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.787 | 132 | 234 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.1E-20 | 132 | 233 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 4.6E-35 | 258 | 341 | IPR010525 | Auxin response factor |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 990 aa Download sequence Send to blast |
MKTPANTAGA ASNSGEGGGG EKKTINTELW HACAGPLVNL PAAGTHVVYF PQGHSEQVAA 60 SMKKDIDGQI PNYPNLPSKL LCILLNVTLH ADTETDEVYA QMTLQPVPSY DREALLRSDL 120 ALKSNKPQTE FFCKTLTASD TSTHGGFSVP RRAAEKIFPP LDFSMQPPAQ ELMARDLHDN 180 IWTFRHIYRG QPKRHLLTTG WSLFVSGKRL FAGDSVLFIR DEKQQLLLGI RRANRQPANL 240 SSSVLSSDSM HIGILAAAAH AAANNSPFTV FYNPRASPSE FVVPLAKYYK AVHSNQISLG 300 MRFRMMFETE ESGTRRYMGT ITGISDLDPV RWKNSQWRNL QVGWDESTAG EKRNRVSIWE 360 IEPVTAPFFI CPPPFFRSKH PRQADDDASD LDNVFKRTMP WIGDDFGVKD SQSLPGLSLV 420 QWMNMQQNPS LANAMQSSYM HSLPGSILQN LNGGLSQMPQ QNNLQYTGQS LPQQVPQIDQ 480 LAKLPSTVNP LGSNILPQQP LGDISQQSRQ NMITQNLPSG PVQAQVLQPQ NLVQTSNILQ 540 QQPSIQNPQL PANLPQNLQQ QQQQQHIMGQ NQQQNLMQTQ LPDPINQNLQ MSDKQIQLHL 600 LQKLQQQRQS LLSQQSALQQ PAQLIQLQDQ QRQLLDASQS FSRSGTPTQM LEMHQVTPTS 660 LPQSNIMSQQ IANSGSLNNV QFSQPPQQPK LEQQQPGILP QMPGHMGLPA SHIINPVSTA 720 GNSALTGAAG VGQSVITDDN PSCSTSPSTN NCQRLIQPTI NSRTHRSAGI GEEVAQSASA 780 LLNPSALETM PSNANLVKDL PHKSDVKPSV NISKTQNQGF FTPQTYLNGA ATQTDYLDTS 840 SSTTSVCLSQ NDVHLQQNNS LSYNPQSTLR DASQDGEVPV DPRSNIPYGA NIDGPLGSMN 900 PDPLLTKGMM GLGKDFSNNI SSGAMLANYE NSKDAQQELS SSIVSQSFGV PDMAFNSIDS 960 TINDSSFLNG GPWAPPPQFP QRMRTYTKV* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-171 | 19 | 362 | 45 | 388 | Auxin response factor 5 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Down-regulated by auxin under light condition. {ECO:0000269|PubMed:17408882}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006453190.2 | 0.0 | LOW QUALITY PROTEIN: auxin response factor 19 | ||||
Refseq | XP_006474325.2 | 0.0 | LOW QUALITY PROTEIN: auxin response factor 19-like | ||||
Swissprot | Q6Z2W3 | 0.0 | ARFE_ORYSJ; Auxin response factor 5 | ||||
TrEMBL | A0A067FFL5 | 0.0 | A0A067FFL5_CITSI; Auxin response factor | ||||
STRING | XP_006474325.1 | 0.0 | (Citrus sinensis) | ||||
STRING | XP_006453190.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16229 | 10 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19220.1 | 0.0 | auxin response factor 19 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g001969m |