PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g001969m
Common NameCISIN_1g001969mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ARF
Protein Properties Length: 990aa    MW: 108488 Da    PI: 6.8871
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g001969mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B370.71.8e-22132233199
                        EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                        f+k+lt sd++++g +++p++ ae++       + +++  ++l+ +d++ + W++++iyr++++r++lt+GW+ Fv+ ++L +gD+v+F   
  orange1.1g001969m 132 FCKTLTASDTSTHGGFSVPRRAAEKIfppldfsM-QPPA-QELMARDLHDNIWTFRHIYRGQPKRHLLTTGWSLFVSGKRLFAGDSVLFI-- 219
                        99*****************************954.5444.48************************************************.. PP

                        SSSEE..EEEEE-S CS
                 B3  86 grsefelvvkvfrk 99 
                        ++++++l+++++r+
  orange1.1g001969m 220 RDEKQQLLLGIRRA 233
                        5688889****997 PP

2Auxin_resp120.81e-39258341183
         Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                        aahaa+++s+F+v+YnPras+seFvv+++k+ ka++ +++s+GmRf+m+fete+s +rr++Gt++g+sdldpvrW+nS+Wr+L+
  orange1.1g001969m 258 AAHAAANNSPFTVFYNPRASPSEFVVPLAKYYKAVHsNQISLGMRFRMMFETEESGTRRYMGTITGISDLDPVRWKNSQWRNLQ 341
                        79********************************9889********************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.28E-43121261IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.4E-41123247IPR015300DNA-binding pseudobarrel domain
CDDcd100171.09E-17131223No hitNo description
SMARTSM010192.0E-22132234IPR003340B3 DNA binding domain
PROSITE profilePS5086311.787132234IPR003340B3 DNA binding domain
PfamPF023623.1E-20132233IPR003340B3 DNA binding domain
PfamPF065074.6E-35258341IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 990 aa     Download sequence    Send to blast
MKTPANTAGA ASNSGEGGGG EKKTINTELW HACAGPLVNL PAAGTHVVYF PQGHSEQVAA  60
SMKKDIDGQI PNYPNLPSKL LCILLNVTLH ADTETDEVYA QMTLQPVPSY DREALLRSDL  120
ALKSNKPQTE FFCKTLTASD TSTHGGFSVP RRAAEKIFPP LDFSMQPPAQ ELMARDLHDN  180
IWTFRHIYRG QPKRHLLTTG WSLFVSGKRL FAGDSVLFIR DEKQQLLLGI RRANRQPANL  240
SSSVLSSDSM HIGILAAAAH AAANNSPFTV FYNPRASPSE FVVPLAKYYK AVHSNQISLG  300
MRFRMMFETE ESGTRRYMGT ITGISDLDPV RWKNSQWRNL QVGWDESTAG EKRNRVSIWE  360
IEPVTAPFFI CPPPFFRSKH PRQADDDASD LDNVFKRTMP WIGDDFGVKD SQSLPGLSLV  420
QWMNMQQNPS LANAMQSSYM HSLPGSILQN LNGGLSQMPQ QNNLQYTGQS LPQQVPQIDQ  480
LAKLPSTVNP LGSNILPQQP LGDISQQSRQ NMITQNLPSG PVQAQVLQPQ NLVQTSNILQ  540
QQPSIQNPQL PANLPQNLQQ QQQQQHIMGQ NQQQNLMQTQ LPDPINQNLQ MSDKQIQLHL  600
LQKLQQQRQS LLSQQSALQQ PAQLIQLQDQ QRQLLDASQS FSRSGTPTQM LEMHQVTPTS  660
LPQSNIMSQQ IANSGSLNNV QFSQPPQQPK LEQQQPGILP QMPGHMGLPA SHIINPVSTA  720
GNSALTGAAG VGQSVITDDN PSCSTSPSTN NCQRLIQPTI NSRTHRSAGI GEEVAQSASA  780
LLNPSALETM PSNANLVKDL PHKSDVKPSV NISKTQNQGF FTPQTYLNGA ATQTDYLDTS  840
SSTTSVCLSQ NDVHLQQNNS LSYNPQSTLR DASQDGEVPV DPRSNIPYGA NIDGPLGSMN  900
PDPLLTKGMM GLGKDFSNNI SSGAMLANYE NSKDAQQELS SSIVSQSFGV PDMAFNSIDS  960
TINDSSFLNG GPWAPPPQFP QRMRTYTKV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1711936245388Auxin response factor 5
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by auxin under light condition. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006453190.20.0LOW QUALITY PROTEIN: auxin response factor 19
RefseqXP_006474325.20.0LOW QUALITY PROTEIN: auxin response factor 19-like
SwissprotQ6Z2W30.0ARFE_ORYSJ; Auxin response factor 5
TrEMBLA0A067FFL50.0A0A067FFL5_CITSI; Auxin response factor
STRINGXP_006474325.10.0(Citrus sinensis)
STRINGXP_006453190.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM162291013
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19220.10.0auxin response factor 19